Detail information of Os04g0459900_circ_g.3


General Information
CircRNA Name Os04g0459900_circ_g.3
ID in PlantcircBase osa_circ_024076
Alias NA
Organism Oryza sativa
Position chr4: 22957643-22959162  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os04g0459900
Parent gene annotation Peptidase, trypsin-like serine and cysteine domain containing pr
otein. (Os04t0459900-01)
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues shoot, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0459900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCGTCATCAACTGTT
CTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAAgtggatgctcctacagatctgttgaagc
caattaacgtgggacaatcttcagctctaagagttggtcaacagtgtttagcaattggaaatcc
atttggct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 366
Transcript exons: 22957643-22957860,22958464-22958531,22959083-22959162
GTGGATGCTCCTACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTTG
GTCAACAGTGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCAT
CAGTGGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAACA
GATGCAGCTATTAACCCTGGGAACAGTGGTGGTCCATTGCTGGATTCGAAGGGGCATATGATTG
GTATTAATACAGCAATTTTCACACAGACAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCGTC
ATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAA

Genomic sequence GTGGATGCTCCTACAGATCTGTTGAAGCCAATTAACGTGGGACAATCTTCAGCTCTAAGAGTTG
GTCAACAGTGTTTAGCAATTGGAAATCCATTTGGCTTTGACCATGCTCTAACTGTTGGTGTCAT
CAGTGGTTTAAATCGAGACATTTTCAGTCAAGCTGGAGTAACAATTGGAGGTGGAATTCAAACA
GATGCAGCTATTAACCCTGGGAACAGGTTTGTAGATATGTTTCTTTAATGATTTATCAACTGAT
TACCCTTTTCTGGTCTCAGAACCCAACCTGGAAACTACCATTAGTTGTACTGGTTTACATCTGT
ATATTACTTACTGACAAGCATAAACACTTTTGTCACTAGTTACTTGATGGCTATACTGTATTAC
TGTTTATGGTTTCTACTATGCACAAAATGATAGTACTTGCCTATAACAGTGCAAAACAGTTGAC
TCAGGACACAGAAGAGGAAGTATTTTACTTCTTACTTTCTTGAGTTTCTAGCATCGCATCTAAA
GTCAGGACACATAGATTGGGGCTAAATTGCAGCTCTGGCAGTTGGCATAGTGGTAATATTTGTT
GCTACCAGTTTACTATATTAGGGTAGAATTTGATCATATTTGTGGTCAAAATCAGCTTGACCAT
GTATGCCCTCGTCCTTGAAGTGATTTAGTATGCATTACCTGTACTCTGGGGCAATGAACATCTA
GGGTTAAGGATCATGTTGTAAGTAGTGGTTTATACAATATGTGTTGGATATTTATGTTTCTGAA
AATGTATTATAGAGGGTTTTACTAAGCATGTATACTGATGTATGTCCATGCAGTGGTGGTCCAT
TGCTGGATTCGAAGGGGCATATGATTGGTATTAATACAGCAATTTTCACACAGACAGGTTAGAT
TATCTCAACATGAAATGTATTAATCAAATAGCACTGAATTGTTTCATGCTGATTTGCGGAGGTA
ACATTAGTAGATGTTCATGCTTTCTCTACAGATGTCAAGCACTGCACTTAGCATTCAAAAGAGA
ATATGTCCAATTAGTAAAAGTTCATCCTCAATAAACTAAAATGATCATAACACATTGCAAAGCT
TGCCTCGATCCCTGTACATCAGTTCATTTCCCAGAGTACTCTGGTTGATGGCACACTTTGAGTG
ACTTTCTATTTTGATGGCATGATTAGTGAGTGGTATCATCTATCATGTTTATATTCGGATTCAC
AGCATTCTTTGAAATTGTTATTTGCTTGCATCCTAATGGGCTGTAAGAATTGACATAATTGATT
ATAGTTGACTCAAAATCACCTCCTTGAAGCTGTGCATTAGACCATTTGTTTTTGTTGTTGATTT
GGTAGAGCATAAATCAGATATTCAGATCCAACTATGTCCAATGTAACTTAAATTCCTATGTTAG
TCTGAGATTCCATTATTTCTTCAATGTCGCAGGAACATCTGCTGGTGTTGGTTTTGCCATCCCG
TCATCAACTGTTCTGAAAATAGCTCCTCAGTTAATTCAGTTTGGAAAA
Conservation Information
Conserved circRNAs osi_circ_005527* osi_circ_014426
PMCS 0.283411294
Functional Information
Coding potential Y
Potential coding position 22958496-22959159(+)
Potential amino acid sequence MIGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQC
LAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINT
AIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNP
FGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQT
GTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHA
LTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGV
GFAIPSSTVLKIAPQLIQFGK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017