Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0459900_circ_g.3 |
ID in PlantcircBase | osa_circ_024076 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 22957643-22959162 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os04g0459900 |
Parent gene annotation |
Peptidase, trypsin-like serine and cysteine domain containing pr otein. (Os04t0459900-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3 |
Tissues | shoot, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0459900-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005527* osi_circ_014426 |
PMCS | 0.283411294 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
22958496-22959159(+) |
Potential amino acid sequence |
MIGINTAIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQC LAIGNPFGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINT AIFTQTGTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNP FGFDHALTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQT GTSAGVGFAIPSSTVLKIAPQLIQFGKVDAPTDLLKPINVGQSSALRVGQQCLAIGNPFGFDHA LTVGVISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGINTAIFTQTGTSAGV GFAIPSSTVLKIAPQLIQFGK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |