Detail information of AT2G03240_circ_g.2


General Information
CircRNA Name AT2G03240_circ_g.2
ID in PlantcircBase ath_circ_012663
Alias NA
Organism Arabidpsis thaliana
Position chr2: 974494-974899  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing AT2G03240_circ_g.1
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGAGGAGCAGCAAGGCAGTGAAAGAGGCAAGTGAGGAAGAAGAAGCGACTCGACCGGTAGAA
GATGTTGAATGGTAAGACTAGAACTACAAACATACCctgaaggagacgagagacgtatgggatg
acagcaacaatgaataagaaagcattgtaggcatctgactctgtgcaagtgtttattcgatgtt
tgtaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGGAGACGAGAGACGTATGGGATGACAGCAACAATGAATAAGAAAGCATTGTAGGCATCT
GACTCTGTGCAAGTGTTTATTCGATGTTTGTAATCTCCCCAACCGTAATGACATATATAAAACT
GGATACTTCGAAGAGCTTGCACCTGACTTGTTAACTGATCGCCCACCAAGAAATCAGGTAATGT
TACCTGCAGGAGAAGTCGAATATTAAGATTTGGATATGTTGAAGTACAATGATCAAATTTTTAT
TTTTCATCATCAATCATCAATGAGACGTTCAGTTTCTGTTCCTACCTTGTATAGAGGAGCAGCA
AGGCAGTGAAAGAGGCAAGTGAGGAAGAAGAAGCGACTCGACCGGTAGAAGATGTTGAATGGTA
AGACTAGAACTACAAACATACC
Conservation Information
Conserved circRNAs NA
PMCS 0.190427997
Functional Information
Coding potential Y
Potential coding position 974897-974496(-)
Potential amino acid sequence MFVVLVLPFNIFYRSSRFFFLTCLFHCLAAPLYKVTLPDFLVGDQLTSQVQALRSIQFYICHYG
WGDYKHRINTCTESDAYNAFLFIVAVIPYVSRLLQGMFVVLVLPFNIFYRSSRFFFLTCLFHCL
AAPLYKVTLPDFLVGDQLTSQVQALRSIQFYICHYGWGDYKHRINTCTESDAYNAFLFIVAVIP
YVSRLLQGMFVVLVLPFNIFYRSSRFFFLTCLFHCLAAPLYKVTLPDFLVGDQLTSQVQALRSI
QFYICHYGWGDYKHRINTCTESDAYNAFLFIVAVIPYVSRLLQGMFVVLVLPFNIFYRSSRFFF
LTCLFHCLAAPLYKVTLPDFLVGDQLTSQVQALRSIQFYICHYGWGDYKHRINTCTESDAYNAF
LFIVAVIPYVSRLLQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017