Detail information of AT2G03240_circ_g.1


General Information
CircRNA Name AT2G03240_circ_g.1
ID in PlantcircBase ath_circ_012662
Alias At_ciR1684
Organism Arabidpsis thaliana
Position chr2: 973903-974899  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G03240
Parent gene annotation Phosphate transporter PHO1 homolog 5
Parent gene strand -
Alternative splicing AT2G03240_circ_g.2
Support reads 6
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03240.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGAGGAGCAGCAAGGCAGTGAAAGAGGCAAGTGAGGAAGAAGAAGCGACTCGACCGGTAGAA
GATGTTGAATGGTAAGACTAGAACTACAAACATACCctgaagaaattccatatcccacggcgga
taatctctagactggcaacaacagcaaccatcgtctgtctgtgcatgaaggagaaattgaaatc
aagcacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAGAAATTCCATATCCCACGGCGGATAATCTCTAGACTGGCAACAACAGCAACCATCGTCT
GTCTGTGCATGAAGGAGAAATTGAAATCAAGCACGGTCTGCAGCCACGCGAACCTGAGCAAGAT
GTTCAAGATCTGCATATGTTTTTAAAGTTAAGAATCAATTTTGCACTAGGATTCCAAATGTTGT
GTTACTCTATAGTTTGTGCTTACCATCGCGATGAAGTATACTTTCTTCTGCGGGACAAGGAGTT
TATCACGGAGCCAAGGGTTCTTAGATGTTCTGTTTAGAAGACCCCAGTCATAGACTAAGTCCCA
GTAAGTACAGAAAATGGCAGCAATAGCTGAGAAGATCCCAGCTAATATTCTCCATATAAATTGA
TTATCCTCGTCGACACTGTAAGTCGTCCTCAAGCAGACAGCCACTATAGTCAAGAAGTACTTGA
GGCCATTGTATCCTTGTTCTGGGTTTTTCTCTTCAAACAGTCGCCTCAAGCACTGCAAATATAT
AGTGTTCTTTAGCAAATATTATATGAATGAAGAGAGTTTCGAATGGTTGGATTTCGTATGAACT
CAACAAGCTTTGTACCTGAAGGAGACGAGAGACGTATGGGATGACAGCAACAATGAATAAGAAA
GCATTGTAGGCATCTGACTCTGTGCAAGTGTTTATTCGATGTTTGTAATCTCCCCAACCGTAAT
GACATATATAAAACTGGATACTTCGAAGAGCTTGCACCTGACTTGTTAACTGATCGCCCACCAA
GAAATCAGGTAATGTTACCTGCAGGAGAAGTCGAATATTAAGATTTGGATATGTTGAAGTACAA
TGATCAAATTTTTATTTTTCATCATCAATCATCAATGAGACGTTCAGTTTCTGTTCCTACCTTG
TATAGAGGAGCAGCAAGGCAGTGAAAGAGGCAAGTGAGGAAGAAGAAGCGACTCGACCGGTAGA
AGATGTTGAATGGTAAGACTAGAACTACAAACATACC
Conservation Information
Conserved circRNAs NA
PMCS 0.170628912
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015