Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019283_circ_g.2 |
ID in PlantcircBase | zma_circ_009248 |
Alias | Zm07circ00024 |
Organism | Zea mays |
Position | chr7: 25501038-25502971 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019283 |
Parent gene annotation |
Calreticulin |
Parent gene strand | - |
Alternative splicing | Zm00001d019283_circ_g.1 Zm00001d019283_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019283_T010:9 Zm00001d019283_T009:10 Zm00001d019283_T005:10 Zm00001d019283_T007:10 Zm00001d019283_T003:9 Zm00001d019283_T008:10 Zm00001d019283_T002:8 Zm00001d019283_T001:4 Zm00001d019283_T006:5 Zm00001d019283_T004:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.239201857 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25502921-25501228(+) 25501227-25502928(-) |
Potential amino acid sequence |
MFSSFFHSDLTHRLSQPSLLPFFSRPHQKQPFLPPCACPRSPLQKSWPRQGHQ*(+) MTLPWPRLLQRRPGASTRRQKRLLLMRPRKKRKKRWLGKSVGQVRVEEG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |