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circRNA ID
AT1G01620_circ_g.3
Alias
ath_circ_000086, 1:226642-227108
Organism
Arabidpsis thaliana
Position
chr1: 226642-227108  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
TMP-B
Parent gene strand
-
Splice junction sequence  
GGCGATTCCGGCTCTGTAGAAGGACCACGAACTCAGCTCGCCTGGCTCGAAAAATGGAGCTGGT
GGTGGCTCCTTGTAGTCTTTGTCCGTCTGAGCCGATcttacgagccaagaacagaccaaatgtc
accgctgggtttatgtgcccacctgtgaaacacacacacacacacactcatcagaatcaactct
aaattaag
Support reads
2
Tissues
root
Exon boundary  
No-No
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTACGAGCCAAGAACAGACCAAATGTCACCGCTGGGTTTATGTGCCCACCTGTGAAACACACA
CACACACACACTCATCAGAATCAACTCTAAATTAAGATCTCTTTGAGAAAAATCGAAAACTAAA
AGCAGAGCTACAAGGGTTTGAAGCATGCAACAAAAGACCAATTCTACTTGTATTAAGAAGATAA
AAAAAATGGGGTTACCAGAGATTCCAGCAGTACAGTAGACAAGGGCAAAGATCATGCCACCGAA
AGCCCAAGCAATGCCTTGGATTCCAACAGAGGCACACATGTTTGGTGCTCTCTTCACTCCCATC
ACTGTCAATACTGTTATGTATAGAAACAGGAAGGTGGCTATGAACTCGGCGATTCCGGCTCTGT
AGAAGGACCACGAACTCAGCTCGCCTGGCTCGAAAAATGGAGCTGGTGGTGGCTCCTTGTAGTC
TTTGTCCGTCTGAGCCGAT
Number of exons covered
AT1G01620.2:3
AT1G01620.1:2
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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