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circRNA ID
AT1G01620_circ_g.2
Alias
ath_circ_000085, Ath_circ_FC0126, Ath_circ_FC5429
Organism
Arabidpsis thaliana
Position
chr1: 226396-226691  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
KNIFE, PcircRNA_finder, circRNA_finder
Parent gene
Parent gene annotation
TMP-B
Parent gene strand
-
Splice junction sequence  
GCTCCGAGACATTGCATCACGATGTAAAAGACAGCTCTCGTCAATGACAGCTTACGAGCCAAGA
ACAGACCAAATGTCACCGCTGGGTTTATGTGCCCACcggaacgtgggagtcacgagcgcttctc
ttggcgtcagtggcggagaagaccgtgtagacaaggacgaaggttccgattatctcagcaccca
aaccagag
Support reads
342
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CGGAACGTGGGAGTCACGAGCGCTTCTCTTGGCGTCAGTGGCGGAGAAGACCGTGTAGACAAGG
ACGAAGGTTCCGATTATCTCAGCACCCAAACCAGAGCCCTTAGTGTAGCCGTGAGCGACTGTGT
TGGCTCCTCCGCCGAGAGTTTGGTAAGGATTTGGCTGGAAGCCTTTGACAACTCCGGCGCCGCA
GATGGCTCCGAGACATTGCATCACGATGTAAAAGACAGCTCTCGTCAATGACAGCTTACGAGCC
AAGAACAGACCAAATGTCACCGCTGGGTTTATGTGCCCAC
Number of exons covered
AT1G01620.1:1
AT1G01620.2:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017;Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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