Detail information of BGIOSGA021508_circ_ig.17


General Information
CircRNA Name BGIOSGA021508_circ_ig.17
ID in PlantcircBase osi_circ_006644
Alias 6:9313368|9318249
Organism Oryza sativa ssp. indica
Position chr6: 9313368-9318249  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021508_circ_igg.3 BGIOSGA021508_circ_igg.4 BGIOSGA021508_circ_ig.1 BGIOSGA021508_circ_ig.2 BGIOSGA021508_circ_ig.3 BGIOSGA021508_circ_ig.4 BGIOSGA021508_circ_ig.5 BGIOSGA021508_circ_ig.6 BGIOSGA021508_circ_ig.7 BGIOSGA021508_circ_ig.8 BGIOSGA021508_circ_ig.9 BGIOSGA021508_circ_ig.10 BGIOSGA021508_circ_ig.11 BGIOSGA021508_circ_ig.12 BGIOSGA021508_circ_ig.13 BGIOSGA021508_circ_ig.14 BGIOSGA021508_circ_ig.15 BGIOSGA021508_circ_ig.16 BGIOSGA021508_circ_ig.18 BGIOSGA021507_circ_ig.1 BGIOSGA021507_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGCTGGATGTAGACAAAAAATGGCTTGAACAAGTCAACTTAATATGCTTCTCCCCACGAAAT
CAGTCTAATAATAAGCTTCATTCAATTTCAATTTTCctttgtcatactgcacaaatgaaagaaa
ctaattactataattcagtgtttttcttcaaggttcttcagagtccagataatatcttcagaag
ctcaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTCATACTGCACAAATGAAAGAAACTAATTACTATAATTCAGTGTTTTTCTTCAAGGTTC
TTCAGAGTCCAGATAATATCTTCAGAAGCTCAATCTTAGGTTCTCAATTTAACCGACATAATCA
AAATCTTCAATTAACACAGTCAGGAGCTCATCTTCATCATCTGGTAACAGACTTCCATTCAAAT
GTTGTGCAACATCAATCATGAGGCCTGCAACTCTAGTATTAGTGAATGACTGCTTCACTATGCA
AAACAAATAATCCTTTTGTTAAGCACTGCGCTCCCTTTCTTTACCTGGCACTGCATGAGACACC
TTGATGTGAATTTATGGAAATTGATCACAGATTTTTAAAAAAATCTCTAAATGTTTTGCAAATG
GCAGAACTTATTGCAATGAGCATCAACTTGATGTTAGGTACTGGTGTTGTGCTTGCAAGGTCCC
ATCTTTCGAACTTTCTTCTCGAGTTCTCCTAGAAAAAAAGATCTGATCATTACTTCGATCCCAG
CTGATGAGTTCTTTTAGATGGAATGGATGCAGGTTTTGTAGAACATCATAAATATGCCAGGATT
AGGGTCTCTCAAAATTACATCACCAATTGCAACCAATCCCAGATTTCCTTTCAACACGATCCTA
GGTAATCAACAGATATTCCAAGATAGTTCACTATTACAGACAAATAACATACCATTAATTCTGT
ACTCTGCAAGTTAAAGTAACTTTTCTATTGTACTAATTATCAATGTCATGAAGCTATCATGTTT
CCTATTTTCTGCATCTATAGCTCTATCGAGTATCCCATGAGATGTTGAAATGTCAAATAAGATA
AAAAAGGTATAAATTTCAGATTCAGTGAGAAAAGATATAAATCTTTTATATATGTTCCTAGTAA
ATAATACGATACCCTTCTTAGCAACTTGATCTTCTGGAAAAGTTTAGGCACATCATTTCATACA
AATAAAACTGCCTATGTTAATTTGTTGAACATATCATGGAACTCAAAATAGAACAATCCTTATG
ATGCTTCAGTAGCCAAAAGGGTTAAAAATAAGGGTTTTTTGAATGAAGCAGAGTAGGAATACAA
ACTTTTTCTCTTACTATATCTAGAAAAAGAATATTCTCATTAGCTGTTCTGAACCACGCTAACT
GCAGCAATGCAGCTCCTGCTGAAAAACAAAAAGAAACAGTCAGAACTAATGACCAAACAGGACA
CTATCTATTAGCACATTTTCTATTATGAAATCTTCACCCGGAAGATACTATATAGTGACAAGCG
TGCCATTATAAAAGTTTTAGTGCTTTGGCATACAACATATCTTTCGCAAGGACTGAAATCTGAT
ACTTGGAATCTAACATGATGGAAGAAATTTCTCTTAAACGGTGTCTAGCTAGCAATACCAACAC
CATGTAACATGAACACTGATGGAGGAAAATCAAGATGTTTATTGTTCATAAAGTGATCACCATT
TATACATAAATAGAATAAAAAACCACTACGATTTAACTTTCAACATAGATACACTAACCAAATA
TAGAAGTAAGAACCATAAACATCTAAGATAGAAGTGACTAACCAAATATAGAAGGGTCAGAATT
TGGTTAAAACTGCCATATCTAAGATGTTTGCTCTTGTTTCATGACCTGAAAATTAAAGAGTGAT
ATAATCAGTGAAACTTAGCATCTAATGTATTTATCAATTCTTGTTGTAGCATTGCAGATAAATC
TGTTCTACCTTGATTTTATTTTCCAAGTTAGATATGGCAGCTGCCCATAATTTCTTGGCATTGT
CATACTTTTGGGAAACACTTCTCAGTTGATCAGCTTGTGTGTCAAGGACCTGTTCTGTCAGGAA
TGTAAAACACTGGTGAGCATACATAAGCATCTTATCTGAAAATTACCTGGCAAGTCACAAACAA
CTCTGTGTCCAGCTATTTGCACAAGCAAGGTAAAAAAACACATCATAAACTGTGTGTAGCTATC
CCCATAGTAATGGTCAATTGTCATTCAGACAATGTTTTTCCATTACATGCTTTGGAATAGTAAA
TGATGTGTTTATAATGGCTATTCCGTTACACATCATATTTTGATGCATCAGATGCCCACAGTAA
GATGTTTATATGCCTATTTGCATGTTGTATCAGTAGAAAAGGCTTCAAGGCTTAGCTCCCTATT
TCCTAATGATATCCTTGTGTAGCATTAGTTACATATTCTGTTGCTTAATCAATCAAAAAAACAT
TCAGTAGGATAAGGATTATTAGTTTCCACTTTGGGGCATTTTCTTTTTGGACTGTGATACTGTA
TGTGTCTGCACTTTTCAAGTAAAGAAATGGTGCCATAAGAGGGACATGATCAAATGACATTGTT
TCTATAAATTATATGCAGACAGAGTGGAGAAGGCAGAGAAGACACGATGGATGACACTAAAAGA
ACCTTTCCTCCCAAATCTGTCAAACAACCAATGTTACAACTGGACATACATACCTCTCTCGCTG
CTACCCGTGTCGACAGTAGCACGATCTCGCCGACAATCGTCGTTGTGCCGCACTTGAATAGTCG
AGAGAACAGCGACAGCATGGCGGTTGCACTGGAGGAAGAGGAGGGAGAAGGAGCCATCAAGAAG
GAGACATTTATCCATTCAGATCTAGCCCAAAAACAACACAAGGAATCTTTTACCTCCACACAGG
GCAGATGAGGAAGAAAGTGGCAGGGAGATGAGAAGAGGAAAGAAGACGAGGATGAGAAGAGGAA
AGGAGAGGAGATCCATGGGAGGAAGATGAGAGACGAGGTAGTGGCTGGCTTACCATCAAGGTCG
TCACTTGATCTACAATCACCGACCCACACCGCCTCCATCTGCCCTCGCCGGTGAGGGGAGGAGA
AAAGGGGCTCCATCGATGTGTGTCAACAGAAATCATACTGAAAGAGGGCTCAAAAGAATTGTTT
TGGCAAGATAACTGAATCAAAACTAAGAGCCTAGAGATATAGCACATAATCTATAGAAGTTGGC
AAAGTGGAAGTGTCGAAATGTGACAACTGAAATCTCGGACAACAATGGCTTACTATGCTTCGGC
CAATAATAACGATTGAGGAGATAAATGAGTTAGTCACTCTAGCCCATCCCTTTCAAAACACAGT
TTTAATCACCGGAGAAAAGGATGACATAAGATGGAGATGGATAAATTCAGGTGAATACTCTACA
TAATCAGCTTACAGGGCGCAATTTAAAGGTTCCTTTACGAGGTTTAATTTCAAACAACTAAGGA
AGGGAATGTGGAGCCAAAATCATTTTTTTTCAGCTGGCTGGTTTTGCATCAAAAGGCTCTAACT
GCAGGTAACCTTCTGCGCCATAGATGACCATGCAATTGGATTTGTTGTTATCTGTGTGGTGAGG
CTTTCGAAACAACAAACCATTTGGCCACCAAATGTTTTACCAAGGTCTTAGACATGGTATGTTG
ATGGCGAGGCCTCACATGCAAACTACCTCAAAGCCCCTAAACAAGATTAACCAAAAGATGGGAT
AGTTTGTGCAAAATCACACCTAAACATACAAGGAAGAAAATTATCACAATTCAGTCGGTTATTT
TGGTGGAACTTTTGGCTGGAAGAATAGAATGTTTTCTAAGATGAACACCAACAGGAAGAACAGG
TTGCTACCTTGGTGATCCAGAACATAAATGAAAGAGCTTTTGTGGTTAATTACATAGAGTAAAT
CTTATTTACCTCTCTTATGGTTCCGGTCGAAGTTGTACAACCCTGGATATTGTAATAAGTCCAA
ACTTGTACAAGAAAATATTATCTCGTTAATATAAGAAAAGGCAGAACTCCAGCCTTCCTGCTTC
AAAAAAAAAAAAAAAAGGATTCCTGAATCAATCATCAATTAATCCGAGAGAACACTCCTTTTAA
CAGTAAAAATTGACACAGGGGCTCAAAAAAAAAGTAGAGAATAAGCCGCAAACCGTAGATGGTA
TATTGGCTGCGTGGAGAAAAGGATTGAATATAGCTCACAAACAAAGCCCTCACTGACCCCCACT
ATTCCATCAACTTTATTACAGATCTTCTAATCTGCGCTGAACCAAAACCATGAACGATGAATGA
TCTTACAAATTACCACAGATGCAAATAAATAAGGCAGCTTGAAATTATGATGGATAAAGCCACT
TTGACCTCTGCAATACTAGATGCCAATGATGTACGAAGCATGTTTTTCCATCATTTAGCCATTG
CTCTCAGCGTACTCCTAGATTTAATAAGCTGAAAACTCTGGAAGCACATGACAGTCTCCAACCA
AAGCAGATATTGGAAGATCACTGTTGGGCCATATCTATAACGCCAACCATTAATTACAGCACCA
TTGGCACCATCTGTCATTTCCTCCACAAGCAAAAGTGCAAAACAGATGACTCAATCCTCTTCTA
TAACATGTGGAACACAAAACCCAATCATTTTCCAGAAGTAAGTCCAGCAAAAGCCAACTACAAC
TGCTGTCAGTTTCGCTCCCAATAGTTCAACTTCTGTTGACAACATAGTTTCGCTAGGGGACAGA
GACCGAGCTTTGCTAGTATATAAAAATGTGGTAGTTTTGAAACAGAATCAGTGATAGTGATATT
ATGCATTGCTTATCTCTCATCAATCTTTTTTTTTTCTGGCTCCTCCAGCAATCAATCCAGAGAA
AGAAAACACAATTACAATGTAAAAGATATTACATCAGTGTAAAAGAAATATTGTACTTTTATGA
TCAGTAAAGAAATATATTATGACCTACCGTGTTGTATTGCTTCCCTTGGGCTGGATGTAGACAA
AAAATGGCTTGAACAAGTCAACTTAATATGCTTCTCCCCACGAAATCAGTCTAATAATAAGCTT
CATTCAATTTCAATTTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021