Detail information of BGIOSGA021508_circ_ig.18


General Information
CircRNA Name BGIOSGA021508_circ_ig.18
ID in PlantcircBase osi_circ_016908
Alias Chr06:7996161_8000739(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 9313667-9318249  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA021508_circ_igg.3 BGIOSGA021508_circ_igg.4 BGIOSGA021508_circ_ig.1 BGIOSGA021508_circ_ig.2 BGIOSGA021508_circ_ig.3 BGIOSGA021508_circ_ig.4 BGIOSGA021508_circ_ig.5 BGIOSGA021508_circ_ig.6 BGIOSGA021508_circ_ig.7 BGIOSGA021508_circ_ig.8 BGIOSGA021508_circ_ig.9 BGIOSGA021508_circ_ig.10 BGIOSGA021508_circ_ig.11 BGIOSGA021508_circ_ig.12 BGIOSGA021508_circ_ig.13 BGIOSGA021508_circ_ig.14 BGIOSGA021508_circ_ig.15 BGIOSGA021508_circ_ig.16 BGIOSGA021508_circ_ig.17 BGIOSGA021507_circ_ig.1 BGIOSGA021507_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGCTGGATGTAGACAAAAAATGGCTTGAACAAGTCAACTTAATATGCTTCTCCCCACGAAAT
CAGTCTAATAATAAGCTTCATTCAATTTCAATTTTCcctggcactgcatgagacaccttgatgt
gaatttatggaaattgatcacagatttttaaaaaaatctctaaatgttttgcaaatggcagaac
ttattgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGCACTGCATGAGACACCTTGATGTGAATTTATGGAAATTGATCACAGATTTTTAAAAAAA
TCTCTAAATGTTTTGCAAATGGCAGAACTTATTGCAATGAGCATCAACTTGATGTTAGGTACTG
GTGTTGTGCTTGCAAGGTCCCATCTTTCGAACTTTCTTCTCGAGTTCTCCTAGAAAAAAAGATC
TGATCATTACTTCGATCCCAGCTGATGAGTTCTTTTAGATGGAATGGATGCAGGTTTTGTAGAA
CATCATAAATATGCCAGGATTAGGGTCTCTCAAAATTACATCACCAATTGCAACCAATCCCAGA
TTTCCTTTCAACACGATCCTAGGTAATCAACAGATATTCCAAGATAGTTCACTATTACAGACAA
ATAACATACCATTAATTCTGTACTCTGCAAGTTAAAGTAACTTTTCTATTGTACTAATTATCAA
TGTCATGAAGCTATCATGTTTCCTATTTTCTGCATCTATAGCTCTATCGAGTATCCCATGAGAT
GTTGAAATGTCAAATAAGATAAAAAAGGTATAAATTTCAGATTCAGTGAGAAAAGATATAAATC
TTTTATATATGTTCCTAGTAAATAATACGATACCCTTCTTAGCAACTTGATCTTCTGGAAAAGT
TTAGGCACATCATTTCATACAAATAAAACTGCCTATGTTAATTTGTTGAACATATCATGGAACT
CAAAATAGAACAATCCTTATGATGCTTCAGTAGCCAAAAGGGTTAAAAATAAGGGTTTTTTGAA
TGAAGCAGAGTAGGAATACAAACTTTTTCTCTTACTATATCTAGAAAAAGAATATTCTCATTAG
CTGTTCTGAACCACGCTAACTGCAGCAATGCAGCTCCTGCTGAAAAACAAAAAGAAACAGTCAG
AACTAATGACCAAACAGGACACTATCTATTAGCACATTTTCTATTATGAAATCTTCACCCGGAA
GATACTATATAGTGACAAGCGTGCCATTATAAAAGTTTTAGTGCTTTGGCATACAACATATCTT
TCGCAAGGACTGAAATCTGATACTTGGAATCTAACATGATGGAAGAAATTTCTCTTAAACGGTG
TCTAGCTAGCAATACCAACACCATGTAACATGAACACTGATGGAGGAAAATCAAGATGTTTATT
GTTCATAAAGTGATCACCATTTATACATAAATAGAATAAAAAACCACTACGATTTAACTTTCAA
CATAGATACACTAACCAAATATAGAAGTAAGAACCATAAACATCTAAGATAGAAGTGACTAACC
AAATATAGAAGGGTCAGAATTTGGTTAAAACTGCCATATCTAAGATGTTTGCTCTTGTTTCATG
ACCTGAAAATTAAAGAGTGATATAATCAGTGAAACTTAGCATCTAATGTATTTATCAATTCTTG
TTGTAGCATTGCAGATAAATCTGTTCTACCTTGATTTTATTTTCCAAGTTAGATATGGCAGCTG
CCCATAATTTCTTGGCATTGTCATACTTTTGGGAAACACTTCTCAGTTGATCAGCTTGTGTGTC
AAGGACCTGTTCTGTCAGGAATGTAAAACACTGGTGAGCATACATAAGCATCTTATCTGAAAAT
TACCTGGCAAGTCACAAACAACTCTGTGTCCAGCTATTTGCACAAGCAAGGTAAAAAAACACAT
CATAAACTGTGTGTAGCTATCCCCATAGTAATGGTCAATTGTCATTCAGACAATGTTTTTCCAT
TACATGCTTTGGAATAGTAAATGATGTGTTTATAATGGCTATTCCGTTACACATCATATTTTGA
TGCATCAGATGCCCACAGTAAGATGTTTATATGCCTATTTGCATGTTGTATCAGTAGAAAAGGC
TTCAAGGCTTAGCTCCCTATTTCCTAATGATATCCTTGTGTAGCATTAGTTACATATTCTGTTG
CTTAATCAATCAAAAAAACATTCAGTAGGATAAGGATTATTAGTTTCCACTTTGGGGCATTTTC
TTTTTGGACTGTGATACTGTATGTGTCTGCACTTTTCAAGTAAAGAAATGGTGCCATAAGAGGG
ACATGATCAAATGACATTGTTTCTATAAATTATATGCAGACAGAGTGGAGAAGGCAGAGAAGAC
ACGATGGATGACACTAAAAGAACCTTTCCTCCCAAATCTGTCAAACAACCAATGTTACAACTGG
ACATACATACCTCTCTCGCTGCTACCCGTGTCGACAGTAGCACGATCTCGCCGACAATCGTCGT
TGTGCCGCACTTGAATAGTCGAGAGAACAGCGACAGCATGGCGGTTGCACTGGAGGAAGAGGAG
GGAGAAGGAGCCATCAAGAAGGAGACATTTATCCATTCAGATCTAGCCCAAAAACAACACAAGG
AATCTTTTACCTCCACACAGGGCAGATGAGGAAGAAAGTGGCAGGGAGATGAGAAGAGGAAAGA
AGACGAGGATGAGAAGAGGAAAGGAGAGGAGATCCATGGGAGGAAGATGAGAGACGAGGTAGTG
GCTGGCTTACCATCAAGGTCGTCACTTGATCTACAATCACCGACCCACACCGCCTCCATCTGCC
CTCGCCGGTGAGGGGAGGAGAAAAGGGGCTCCATCGATGTGTGTCAACAGAAATCATACTGAAA
GAGGGCTCAAAAGAATTGTTTTGGCAAGATAACTGAATCAAAACTAAGAGCCTAGAGATATAGC
ACATAATCTATAGAAGTTGGCAAAGTGGAAGTGTCGAAATGTGACAACTGAAATCTCGGACAAC
AATGGCTTACTATGCTTCGGCCAATAATAACGATTGAGGAGATAAATGAGTTAGTCACTCTAGC
CCATCCCTTTCAAAACACAGTTTTAATCACCGGAGAAAAGGATGACATAAGATGGAGATGGATA
AATTCAGGTGAATACTCTACATAATCAGCTTACAGGGCGCAATTTAAAGGTTCCTTTACGAGGT
TTAATTTCAAACAACTAAGGAAGGGAATGTGGAGCCAAAATCATTTTTTTTCAGCTGGCTGGTT
TTGCATCAAAAGGCTCTAACTGCAGGTAACCTTCTGCGCCATAGATGACCATGCAATTGGATTT
GTTGTTATCTGTGTGGTGAGGCTTTCGAAACAACAAACCATTTGGCCACCAAATGTTTTACCAA
GGTCTTAGACATGGTATGTTGATGGCGAGGCCTCACATGCAAACTACCTCAAAGCCCCTAAACA
AGATTAACCAAAAGATGGGATAGTTTGTGCAAAATCACACCTAAACATACAAGGAAGAAAATTA
TCACAATTCAGTCGGTTATTTTGGTGGAACTTTTGGCTGGAAGAATAGAATGTTTTCTAAGATG
AACACCAACAGGAAGAACAGGTTGCTACCTTGGTGATCCAGAACATAAATGAAAGAGCTTTTGT
GGTTAATTACATAGAGTAAATCTTATTTACCTCTCTTATGGTTCCGGTCGAAGTTGTACAACCC
TGGATATTGTAATAAGTCCAAACTTGTACAAGAAAATATTATCTCGTTAATATAAGAAAAGGCA
GAACTCCAGCCTTCCTGCTTCAAAAAAAAAAAAAAAAGGATTCCTGAATCAATCATCAATTAAT
CCGAGAGAACACTCCTTTTAACAGTAAAAATTGACACAGGGGCTCAAAAAAAAAGTAGAGAATA
AGCCGCAAACCGTAGATGGTATATTGGCTGCGTGGAGAAAAGGATTGAATATAGCTCACAAACA
AAGCCCTCACTGACCCCCACTATTCCATCAACTTTATTACAGATCTTCTAATCTGCGCTGAACC
AAAACCATGAACGATGAATGATCTTACAAATTACCACAGATGCAAATAAATAAGGCAGCTTGAA
ATTATGATGGATAAAGCCACTTTGACCTCTGCAATACTAGATGCCAATGATGTACGAAGCATGT
TTTTCCATCATTTAGCCATTGCTCTCAGCGTACTCCTAGATTTAATAAGCTGAAAACTCTGGAA
GCACATGACAGTCTCCAACCAAAGCAGATATTGGAAGATCACTGTTGGGCCATATCTATAACGC
CAACCATTAATTACAGCACCATTGGCACCATCTGTCATTTCCTCCACAAGCAAAAGTGCAAAAC
AGATGACTCAATCCTCTTCTATAACATGTGGAACACAAAACCCAATCATTTTCCAGAAGTAAGT
CCAGCAAAAGCCAACTACAACTGCTGTCAGTTTCGCTCCCAATAGTTCAACTTCTGTTGACAAC
ATAGTTTCGCTAGGGGACAGAGACCGAGCTTTGCTAGTATATAAAAATGTGGTAGTTTTGAAAC
AGAATCAGTGATAGTGATATTATGCATTGCTTATCTCTCATCAATCTTTTTTTTTTCTGGCTCC
TCCAGCAATCAATCCAGAGAAAGAAAACACAATTACAATGTAAAAGATATTACATCAGTGTAAA
AGAAATATTGTACTTTTATGATCAGTAAAGAAATATATTATGACCTACCGTGTTGTATTGCTTC
CCTTGGGCTGGATGTAGACAAAAAATGGCTTGAACAAGTCAACTTAATATGCTTCTCCCCACGA
AATCAGTCTAATAATAAGCTTCATTCAATTTCAATTTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021