Detail information of AT1G66330_circ_g.2


General Information
CircRNA Name AT1G66330_circ_g.2
ID in PlantcircBase ath_circ_008916
Alias 1:24730131-24730448
Organism Arabidpsis thaliana
Position chr1: 24730131-24730448  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G66330
Parent gene annotation Putative uncharacterized protein T27F4.8
Parent gene strand -
Alternative splicing AT1G66330_circ_g.3 AT1G66330_circ_g.4 AT1G66330_circ_g.5 AT1G66330_circ_g.6 AT1G66330_circ_g.7 AT1G66330_circ_g.8 AT1G66330_circ_g.9 AT1G66330_circ_g.10 AT1G66330_circ_g.11 AT1G66330_circ_g.12
Support reads 1/1/3
Tissues seedling;leaf;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G66330.1:2
AT1G66330.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTGACATCTGGAGAGCTTGAGCATTCAGCCAAGAGAGATGCACTACTTTTACCATCCATTGC
ATCAAGGTCAATCAGAGTCGTGACTAACAACTCGAGctgtaatgctcccattcctgcatttcct
agtgtccacattgatggtgccgctgctaaagcattagccaacgcttttctacaacaagacaaga
aataaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTAATGCTCCCATTCCTGCATTTCCTAGTGTCCACATTGATGGTGCCGCTGCTAAAGCATTA
GCCAACGCTTTTCTACAACAAGACAAGAAATAAACAGAGGGATCTCAAATCAGAGAAGGACCAC
ACAATGAAATATTCAGCTAAGAGAATGTTAAGCGAAGAACTCATCGAAGAAAGTAGTTAAGGAG
CGTAATAGAGTGCTGGTGTTACCTTGTATTGACATCTGGAGAGCTTGAGCATTCAGCCAAGAGA
GATGCACTACTTTTACCATCCATTGCATCAAGGTCAATCAGAGTCGTGACTAACAACTCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.19392125
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020