Detail information of AT1G66330_circ_g.7


General Information
CircRNA Name AT1G66330_circ_g.7
ID in PlantcircBase ath_circ_008921
Alias At_ciR3189
Organism Arabidpsis thaliana
Position chr1: 24730674-24731075  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G66330
Parent gene annotation Putative uncharacterized protein T27F4.8
Parent gene strand -
Alternative splicing AT1G66330_circ_g.2 AT1G66330_circ_g.3 AT1G66330_circ_g.4 AT1G66330_circ_g.5 AT1G66330_circ_g.6 AT1G66330_circ_g.8 AT1G66330_circ_g.9 AT1G66330_circ_g.10 AT1G66330_circ_g.11 AT1G66330_circ_g.12
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G66330.1:3
AT1G66330.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACACTGTAACATATCAGACTTTGCTTTTACCTCTAAAGCCATTAATGCGTCTTCCATGGCCCG
TTGTTTAGCACGGAAATCTGCTCGCCTTAAATCAGCctcaatagcagatatgcgatcagatgaa
acttccccagggaaaaacccgagagctattccattcttctcaagcgatatgcgatccgtggtac
cagtttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATAGCAGATATGCGATCAGATGAAACTTCCCCAGGGAAAAACCCGAGAGCTATTCCATTC
TTCTCAAGCGATATGCGATCCGTGGTACCAGTTTCAGATGTCACCCTTAAGATAACAATTTTAA
TATTTACATCTTGATATCAAGAAACAACAAGAAAAAAGGGAAGTGTCAAGGAGTTATGCTTCTT
ACAAGCTGTCAACCATTTTGTTCACCATCATGTCGTGGATGTTCTTAATAAACTGCAACAAAAC
AGGACAGAGTAAGCGTTAACATAAGGGAAGATGAACCAAAAACACCAACACTGTAACATATCAG
ACTTTGCTTTTACCTCTAAAGCCATTAATGCGTCTTCCATGGCCCGTTGTTTAGCACGGAAATC
TGCTCGCCTTAAATCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.192255885
Functional Information
Coding potential Y
Potential coding position 24731034-24730676(-)
24730687-24731072(+)
Potential amino acid sequence MEDALMALEFIKNIHDMMVNKMVDSLVTSETGTTDRISLEKNGIALGFFPGEVSSDRISAIEAD
LRRADFRAKQRAMEDALMALEFIKNIHDMMVNKMVDSLVTSETGTTDRISLEKNGIALGFFPGE
VSSDRISAIEADLRRADFRAKQRAMEDALMALEFIKNIHDMMVNKMVDSLVTSETGTTDRISLE
KNGIALGFFPGEVSSDRISAIEADLRRADFRAKQRAMEDALMALEFIKNIHDMMVNKMVDSLVT
SETGTTDRISLEKNGIALGFFPGEVSSDRISAIE(-)
MRSDETSPGKNPRAIPFFSSDMRSVVPVSDVTKLSTILFTIMSWMFLINSKAINASSMARCLAR
KSARLKSASIADMRSDETSPGKNPRAIPFFSSDMRSVVPVSDVTKLSTILFTIMSWMFLINSKA
INASSMARCLARKSARLKSASIADMRSDETSPGKNPRAIPFFSSDMRSVVPVSDVTKLSTILFT
IMSWMFLINSKAINASSMARCLARKSARLKSASIADMRSDETSPGKNPRAIPFFSSDMRSVVPV
SDVTKLSTILFTIMSWMFLINSKAINASSMARCLARKSARLKS(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015