Detail information of AT2G03150_circ_g.12


General Information
CircRNA Name AT2G03150_circ_g.12
ID in PlantcircBase ath_circ_012659
Alias 2:958330-958834
Organism Arabidpsis thaliana
Position chr2: 958330-958834  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.10 AT2G03150_circ_g.11
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.2:3
AT2G03150.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATGCAGCTGAAGTACTGTTTCGTGTAATTTTACAGGTTGAAGATATGAGAGTAACCATTCAC
AGCTTGGGAAAGTTTCTATCTCACCGTGAAGTCAAGccgcagaagaaagaagaaaaccttgaga
aaactagtggcactgttgctgatcctataactgaagccgaaactgataatagaaaagaagaaag
aggtccta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 321
Transcript exons: 958330-958545,958641-958682,958772-958834
CCGCAGAAGAAAGAAGAAAACCTTGAGAAAACTAGTGGCACTGTTGCTGATCCTATAACTGAAG
CCGAAACTGATAATAGAAAAGAAGAAAGAGGTCCTAACGACTCAAAAACTGAAATCAAACCCAA
GTCGGAAACGGAAAAGCACGGGAAACAAGATGGAGGAACATCTGATGCAGCAAAACGAGAAGAA
ACAGTTGATAAAGAGCTGTTGCAGGCTTTCAGATTTTTTGACCGTAACCAGGCAGGCTATGTTA
GGGTTGAAGATATGAGAGTAACCATTCACAGCTTGGGAAAGTTTCTATCTCACCGTGAAGTCAA
G

Genomic sequence CCGCAGAAGAAAGAAGAAAACCTTGAGAAAACTAGTGGCACTGTTGCTGATCCTATAACTGAAG
CCGAAACTGATAATAGAAAAGAAGAAAGAGGTCCTAACGACTCAAAAACTGAAATCAAACCCAA
GTCGGAAACGGAAAAGCACGGGAAACAAGATGGAGGAACATCTGATGCAGCAAAACGAGAAGAA
ACAGTTGATAAAGAGCTGTTGCAGGTAAATAAATAATCCCTACAAAACTTGAGAAATCGGTTTA
AATGATACTGCGGTTAAGGTGCTAAATCTTTCTTCACTTTGTTTCTTTGGCTCAGGCTTTCAGA
TTTTTTGACCGTAACCAGGCAGGCTATGTTAGGGTAAGAAGAAGACTAATTTGTCTTGTACATA
AAGCCATCTCATAGTCTCTGTGAATGCAGCTGAAGTACTGTTTCGTGTAATTTTACAGGTTGAA
GATATGAGAGTAACCATTCACAGCTTGGGAAAGTTTCTATCTCACCGTGAAGTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.201040233
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020