Detail information of AT2G03150_circ_g.11


General Information
CircRNA Name AT2G03150_circ_g.11
ID in PlantcircBase ath_circ_012658
Alias NA
Organism Arabidpsis thaliana
Position chr2: 957780-958545  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G03150
Parent gene annotation ATP/GTP-binding protein family
Parent gene strand +
Alternative splicing AT2G03150_circ_g.10 AT2G03150_circ_g.12
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03150.1:2
AT2G03150.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCAAACCCAAGTCGGAAACGGAAAAGCACGGGAAACAAGATGGAGGAACATCTGATGCAGCA
AAACGAGAAGAAACAGTTGATAAAGAGCTGTTGCAGaaactacgtgtaaaaattgtgaggcaaa
gaaatcaacggaagaggcatcaggaggagttgtctgtcaagcaaaacgaagcaaaatcccaaga
taagcgtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 672
Transcript exons: 957780-958235,958330-958545
AAACTACGTGTAAAAATTGTGAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTG
TCAAGCAAAACGAAGCAAAATCCCAAGATAAGCGTCAAAAGACAGCTGAACATGAAGACAAGGA
AGCCTCGGTGATAAGCGAATCTGCTCCTGGGAAGGATGATAAAGAAACTTCAGGCAAGGAAACC
GTGGACGGTAGCCGGGAAATTGCAGATAAGGAAGCTGTAGCAAAGACCAAAGAAACTTTGGGCA
GTAAAGAAGTTACTGTGGGTGAAGCTGTTAATATGGAAGTGGAGAATCAGGATGAGGAGGATGA
CGATGGTGATGACGACCCAGAGGAAGATCCTGAGGAGGATCCTGAAGAAGACCCTGAAGAAGAT
CCGGAAGAAGATCCAGAAGAATGCGAGGAAATGGACGTTGCAAATACTGAGCAAGAAGAGCCTG
CTGAAGAGCCGCAGAAGAAAGAAGAAAACCTTGAGAAAACTAGTGGCACTGTTGCTGATCCTAT
AACTGAAGCCGAAACTGATAATAGAAAAGAAGAAAGAGGTCCTAACGACTCAAAAACTGAAATC
AAACCCAAGTCGGAAACGGAAAAGCACGGGAAACAAGATGGAGGAACATCTGATGCAGCAAAAC
GAGAAGAAACAGTTGATAAAGAGCTGTTGCAG

Genomic sequence AAACTACGTGTAAAAATTGTGAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTG
TCAAGCAAAACGAAGCAAAATCCCAAGATAAGCGTCAAAAGACAGCTGAACATGAAGACAAGGA
AGCCTCGGTGATAAGCGAATCTGCTCCTGGGAAGGATGATAAAGAAACTTCAGGCAAGGAAACC
GTGGACGGTAGCCGGGAAATTGCAGATAAGGAAGCTGTAGCAAAGACCAAAGAAACTTTGGGCA
GTAAAGAAGTTACTGTGGGTGAAGCTGTTAATATGGAAGTGGAGAATCAGGATGAGGAGGATGA
CGATGGTGATGACGACCCAGAGGAAGATCCTGAGGAGGATCCTGAAGAAGACCCTGAAGAAGAT
CCGGAAGAAGATCCAGAAGAATGCGAGGAAATGGACGTTGCAAATACTGAGCAAGAAGAGCCTG
CTGAAGAGGTATGATTTACTCATTTGACTCTTTCAAATTGAATCCAACAACAAGATGTTTTCTT
CATAAATCTTCTCATTTTGTTTCATGTCTCTTCTTCAGCCGCAGAAGAAAGAAGAAAACCTTGA
GAAAACTAGTGGCACTGTTGCTGATCCTATAACTGAAGCCGAAACTGATAATAGAAAAGAAGAA
AGAGGTCCTAACGACTCAAAAACTGAAATCAAACCCAAGTCGGAAACGGAAAAGCACGGGAAAC
AAGATGGAGGAACATCTGATGCAGCAAAACGAGAAGAAACAGTTGATAAAGAGCTGTTGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.208808319
Functional Information
Coding potential Y
Potential coding position 958068-958542(+)
Potential amino acid sequence MEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEPQKKEENL
EKTSGTVADPITEAETDNRKEERGPNDSKTEIKPKSETEKHGKQDGGTSDAAKREETVDKELLQ
KLRVKIVRQRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKET
VDGSREIADKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEED
PEEDPEECEEMDVANTEQEEPAEEPQKKEENLEKTSGTVADPITEAETDNRKEERGPNDSKTEI
KPKSETEKHGKQDGGTSDAAKREETVDKELLQKLRVKIVRQRNQRKRHQEELSVKQNEAKSQDK
RQKTAEHEDKEASVISESAPGKDDKETSGKETVDGSREIADKEAVAKTKETLGSKEVTVGEAVN
MEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEPQKKEENL
EKTSGTVADPITEAETDNRKEERGPNDSKTEIKPKSETEKHGKQDGGTSDAAKREETVDKELLQ
KLRVKIVRQRNQRKRHQEELSVKQNEAKSQDKRQKTAEHEDKEASVISESAPGKDDKETSGKET
VDGSREIADKEAVAKTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEEDPEED
PEEDPEECEEMDVANTEQEEPAEEPQKKEENLEKTSGTVADPITEAETDNRKEERGPNDSKTEI
KPKSETEKHGKQDGGTSDAAKREETVDKELLQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017