Detail information of BGIOSGA034760_circ_ig.6


General Information
CircRNA Name BGIOSGA034760_circ_ig.6
ID in PlantcircBase osi_circ_001138
Alias NA
Organism Oryza sativa ssp. indica
Position chr11: 1560395-1561364  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034760_circ_ig.5 BGIOSGA034760_circ_ig.7
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GG-TC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATACACCAATGTCTAATCCTAGCCATGACCAATTCATACCACAGGCTTCAGTTTCTCTGGTT
TCAATATGCCAAAAATGTTCATAATGCAGATTAAATaggagaaaacaatgccatcaacttattt
tccgtacagatcatggtaatatataagttaataaaatacataattgtcaaaataaattatcata
ttacaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGAGAAAACAATGCCATCAACTTATTTTCCGTACAGATCATGGTAATATATAAGTTAATAAAA
TACATAATTGTCAAAATAAATTATCATATTACAACAACCTTACAGACCAAATCAGGACATGGAA
GTCCGAATCATTTGATAATTACAATTTCCAACATCTTTAGGATGCTTAAAGAGCACATTGAAGA
CAACGCACCAAACGAACAGACAAAGGGCCAAACTATACTGGACTGAACCCACCATCTAGCTAGT
TATAGAACATTACATGCCCAGATGTTAAAGATACTACTAGAGAAACAAGTTGGGCCAACTAATT
AGAGATCAGATAGTGCTACTGATAACTCTTCCACAGTTCATAAAGCATAGATTTCTACTCACAA
GAACATTTAATAGATGGTTTTATAATGGCACACTTTACACTCAACCATCGAATTTACTTCTCAG
AGCAGGAAAGCAAATTCAGTTCCATCAATTTTCTTGAAACAAATCTTCAAATTATTTTCACCAT
TAGTCAAAAGATTCCAGCATCACCTTCATAACCTTGTATATTGTTCAAAGGAAGTAACTGCCAA
AAGAATCATCTACCATAGAAACTTTAGGATGGGCCTTTTAGCTACTACATAACCATCTCCATCT
TAACTGATAAATTAGCTTTCCGGAAGTAAACAAGTTAACATCAAAATTCTGTGAGAACTATGAC
CATGTTTAAATGTTCTGACAAGATTGACTGATCCATGAACCATAGCAGGATTTGACTTAACAGC
AAAGTACCAAGCAGATAAATTTCCTCCAAATAACATCATTCACTTGTTAGTTTTGATGACAAAA
GAAGTAGCACCAGTCTTGAATGGAATGGAGAAACCATCTTATACACCAATGTCTAATCCTAGCC
ATGACCAATTCATACCACAGGCTTCAGTTTCTCTGGTTTCAATATGCCAAAAATGTTCATAATG
CAGATTAAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019