Detail information of BGIOSGA034760_circ_ig.5


General Information
CircRNA Name BGIOSGA034760_circ_ig.5
ID in PlantcircBase osi_circ_001137
Alias NA
Organism Oryza sativa ssp. indica
Position chr11: 1560388-1561357  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034760_circ_ig.6 BGIOSGA034760_circ_ig.7
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCATCTTATACACCAATGTCTAATCCTAGCCATGACCAATTCATACCACAGGCTTCAGTTTC
TCTGGTTTCAATATGCCAAAAATGTTCATAATGCAGttaaatcaggagaaaacaatgccatcaa
cttattttccgtacagatcatggtaatatataagttaataaaatacataattgtcaaaataaat
tatcatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAAATCAGGAGAAAACAATGCCATCAACTTATTTTCCGTACAGATCATGGTAATATATAAGTT
AATAAAATACATAATTGTCAAAATAAATTATCATATTACAACAACCTTACAGACCAAATCAGGA
CATGGAAGTCCGAATCATTTGATAATTACAATTTCCAACATCTTTAGGATGCTTAAAGAGCACA
TTGAAGACAACGCACCAAACGAACAGACAAAGGGCCAAACTATACTGGACTGAACCCACCATCT
AGCTAGTTATAGAACATTACATGCCCAGATGTTAAAGATACTACTAGAGAAACAAGTTGGGCCA
ACTAATTAGAGATCAGATAGTGCTACTGATAACTCTTCCACAGTTCATAAAGCATAGATTTCTA
CTCACAAGAACATTTAATAGATGGTTTTATAATGGCACACTTTACACTCAACCATCGAATTTAC
TTCTCAGAGCAGGAAAGCAAATTCAGTTCCATCAATTTTCTTGAAACAAATCTTCAAATTATTT
TCACCATTAGTCAAAAGATTCCAGCATCACCTTCATAACCTTGTATATTGTTCAAAGGAAGTAA
CTGCCAAAAGAATCATCTACCATAGAAACTTTAGGATGGGCCTTTTAGCTACTACATAACCATC
TCCATCTTAACTGATAAATTAGCTTTCCGGAAGTAAACAAGTTAACATCAAAATTCTGTGAGAA
CTATGACCATGTTTAAATGTTCTGACAAGATTGACTGATCCATGAACCATAGCAGGATTTGACT
TAACAGCAAAGTACCAAGCAGATAAATTTCCTCCAAATAACATCATTCACTTGTTAGTTTTGAT
GACAAAAGAAGTAGCACCAGTCTTGAATGGAATGGAGAAACCATCTTATACACCAATGTCTAAT
CCTAGCCATGACCAATTCATACCACAGGCTTCAGTTTCTCTGGTTTCAATATGCCAAAAATGTT
CATAATGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019