Detail information of Os10g0510000_circ_igg.2


General Information
CircRNA Name Os10g0510000_circ_igg.2
ID in PlantcircBase osa_circ_007635
Alias Os_ciR6843
Organism Oryza sativa
Position chr10: 19610444-19610617  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0510000_circ_igg.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATT
CTTGAACTTTTCTAGTACCGCAAaaaaaaattgttgggtctgatggcttgtctatgggtgtatc
tactctgattagctccggtttttgtgtatgccaatataattattcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTT
GTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTG
ATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAA
Conservation Information
Conserved circRNAs osi_circ_008598 osi_circ_008597
PMCS 0.37829751
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015