Detail information of BGIOSGA033259_circ_ig.2


General Information
CircRNA Name BGIOSGA033259_circ_ig.2
ID in PlantcircBase osi_circ_008598
Alias Chr10:21463182_21463356(MH63RS2), Chr10:21937209_21937383(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18568799-18568971  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033259_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTC
TTGAACTTTTCTAGTACCGCAAaaaaaattgttgggtctgatggcttgtctatgggtgtatcta
ctctgattagctccggtttttgtgtatgccaatataattattccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTG
TGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGA
TTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAA
Conservation Information
Conserved circRNAs osa_circ_007635 osa_circ_007634
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021