Detail information of AT2G03140_circ_g.3


General Information
CircRNA Name AT2G03140_circ_g.3
ID in PlantcircBase ath_circ_012645
Alias At_ciR4332, Ath_circ_FC1148
Organism Arabidpsis thaliana
Position chr2: 948567-948877  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G03140
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing AT2G03140_circ_g.1 AT2G03140_circ_g.2
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03140.12:1
AT2G03140.5:1
AT2G03140.2:1
AT2G03140.9:1
AT2G03140.3:1
AT2G03140.1:1
AT2G03140.11:1
AT2G03140.8:1
AT2G03140.7:1
AT2G03140.10:1
AT2G03140.4:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATCTGGGCTACCATCAAAGCAT
TATCATTACAGGACTCATATTTGCCTTGTTCCAGAGattcaagagtttttaaaggcctttgcag
ggggcatcacggtcgttctactaattcagttcataaatgcaatatcaggagctgcgtttctttc
tcggccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 311
Transcript exons: 948567-948877
ATTCAAGAGTTTTTAAAGGCCTTTGCAGGGGGCATCACGGTCGTTCTACTAATTCAGTTCATAA
ATGCAATATCAGGAGCTGCGTTTCTTTCTCGGCCACCATATTTTCCACATTCTTTTGATGCCAT
GAAGTGGCTTAAGGGATGTGGGCAATTTCTTCTGCTGATAATTAGAGGATTTACAGCTGCGACA
TTTGTAGTGCTTGTGGAAGAGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATC
TGGGCTACCATCAAAGCATTATCATTACAGGACTCATATTTGCCTTGTTCCAGAG

Genomic sequence ATTCAAGAGTTTTTAAAGGCCTTTGCAGGGGGCATCACGGTCGTTCTACTAATTCAGTTCATAA
ATGCAATATCAGGAGCTGCGTTTCTTTCTCGGCCACCATATTTTCCACATTCTTTTGATGCCAT
GAAGTGGCTTAAGGGATGTGGGCAATTTCTTCTGCTGATAATTAGAGGATTTACAGCTGCGACA
TTTGTAGTGCTTGTGGAAGAGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATC
TGGGCTACCATCAAAGCATTATCATTACAGGACTCATATTTGCCTTGTTCCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.183288049
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chen et al., 2017a