Detail information of AT2G03140_circ_g.2


General Information
CircRNA Name AT2G03140_circ_g.2
ID in PlantcircBase ath_circ_012644
Alias 2:948051-948877
Organism Arabidpsis thaliana
Position chr2: 948051-948877  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03140
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing AT2G03140_circ_g.1 AT2G03140_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03140.7:2
AT2G03140.8:2
AT2G03140.4:2
AT2G03140.3:2
AT2G03140.12:2
AT2G03140.1:2
AT2G03140.5:2
AT2G03140.9:2
AT2G03140.2:2
AT2G03140.10:2
AT2G03140.11:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATCTGGGCTACCATCAAAGCAT
TATCATTACAGGACTCATATTTGCCTTGTTCCAGAGggctgtgggctttattggcatggtgctc
gttttatggtcaccggttgtgattccattgcttccaacacttctccagaactggtctacaagta
atccttct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 552
Transcript exons: 948051-948291,948567-948877
GGCTGTGGGCTTTATTGGCATGGTGCTCGTTTTATGGTCACCGGTTGTGATTCCATTGCTTCCA
ACACTTCTCCAGAACTGGTCTACAAGTAATCCTTCTAGAGTGGCAGAACTAGCTAGTGTAGTCG
GTCTCTATGTTGCTGTATTCATTCTTGTTATGCTGTGGGGAAAGAGAGTACGGAAGTACGAAAA
CCCATTCAAGCAATATGGGCTTGATTTAAAGGCATCAAACAAAGAAAAGATTCAAGAGTTTTTA
AAGGCCTTTGCAGGGGGCATCACGGTCGTTCTACTAATTCAGTTCATAAATGCAATATCAGGAG
CTGCGTTTCTTTCTCGGCCACCATATTTTCCACATTCTTTTGATGCCATGAAGTGGCTTAAGGG
ATGTGGGCAATTTCTTCTGCTGATAATTAGAGGATTTACAGCTGCGACATTTGTAGTGCTTGTG
GAAGAGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATAGATCTGGGCTACCATCAAA
GCATTATCATTACAGGACTCATATTTGCCTTGTTCCAGAG

Genomic sequence GGCTGTGGGCTTTATTGGCATGGTGCTCGTTTTATGGTCACCGGTTGTGATTCCATTGCTTCCA
ACACTTCTCCAGAACTGGTCTACAAGTAATCCTTCTAGAGTGGCAGAACTAGCTAGTGTAGTCG
GTCTCTATGTTGCTGTATTCATTCTTGTTATGCTGTGGGGAAAGAGAGTACGGAAGTACGAAAA
CCCATTCAAGCAATATGGGCTTGATTTAAAGGCATCAAACAAAGAAAAGGTAAAACCTTTAATG
TAACACGGAGATTAGAATATTAGAATAGTTTGGTTTTCGTTGCACTGCTGAAGAAAATTTCTCG
ACCGTCAATACTTCATTAGCCACTAGACTAACCTTATTCAACTAAGAACTTGGTGGACGTTTTT
CAAACAGCAACAGGAGATGGCTTAGTTGTGATTTTTCTTTTCCCTTAATTTCACATGTTCTTAT
TCTCTTCACTTCCATACATTCAGGCTATTAAGACAGTAGAAATGATACTGTAAGTTCATTCCTT
GCAGATTCAAGAGTTTTTAAAGGCCTTTGCAGGGGGCATCACGGTCGTTCTACTAATTCAGTTC
ATAAATGCAATATCAGGAGCTGCGTTTCTTTCTCGGCCACCATATTTTCCACATTCTTTTGATG
CCATGAAGTGGCTTAAGGGATGTGGGCAATTTCTTCTGCTGATAATTAGAGGATTTACAGCTGC
GACATTTGTAGTGCTTGTGGAAGAGTTGCTCTTCAGATCTTGGATGCCTGCCGAGATTGCTATA
GATCTGGGCTACCATCAAAGCATTATCATTACAGGACTCATATTTGCCTTGTTCCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.562970469
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020