Plant Circular RNA Database

Detail information of CSA021108_g_circ3

			
						 General Information
					
						CircRNA Name
						CSA021108_g_circ3
					
						ID in PlantcircBase
						csi_circ_003024
					
						Alias
						Cs-circRNA600
					
						Organism
						
							Camellia sinensis						
					
						Position
						
							chrxpSc0053620: 51004-56151  JBrowse»						
					
						Reference genome
						
							v1						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI2
					
						Parent gene
						
							CSA021108						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							CSA021108_g_circ1 CSA021108_g_circ2 CSA021108_g_circ4 						
					
						Support reads
						NA
					
						Tissues
						bud
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						CSA021108.1:5

General Information
CircRNA Name	CSA021108_g_circ3
ID in PlantcircBase	csi_circ_003024
Alias	Cs-circRNA600
Organism	Camellia sinensis
Position	chrxpSc0053620: 51004-56151 JBrowse»
Reference genome	v1
Type	e-circRNA
Identification method	CIRCexplorer, CIRI2
Parent gene	CSA021108
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	CSA021108_g_circ1 CSA021108_g_circ2 CSA021108_g_circ4
Support reads	NA
Tissues	bud
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	CSA021108.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AGTAATTACACCATTCGACAGTCATTCACCTCAGGACCAGCTGACCCTATAAGCTCAAAAGTCT
CTAGATCCCAGAATTTAACAGTTCTATCGGCCGAACagctatcattctggaaactggcaagtgg
ctctggcattagattcattccaactctcccagaaacaatacgcctgtcgacctttgcattcatc
tccccttc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	AGTAATTACACCATTCGACAGTCATTCACCTCAGGACCAGCTGACCCTATAAGCTCAAAAGTCT CTAGATCCCAGAATTTAACAGTTCTATCGGCCGAACagctatcattctggaaactggcaagtgg ctctggcattagattcattccaactctcccagaaacaatacgcctgtcgacctttgcattcatc tccccttc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							55935-51006(-)
						
						Potential amino acid sequence
						
							MAFNPDGRTLLCGLHESLKVVSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVV
DLSRIEPYAIGNVTRLKGHPEPKSDSSGNVPILTENNAKVCSGRLAISQNSDPVSKETKSLGRL
SVSQNSDPITKEKESKSFASTGSVPGTPQRVISNTGPKTTPISSISVPGAATLKRGTGKVHLTA
NPSFFNGSDVIPVVVPRNNGRFEQAAESRKEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIA
SDHSETDGFKTTELSGVANRNVFPAVKSSDAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQ
NDSCSADRTVKFWDLETFELIGSAGPETTGVRCMAFNPDGRTLLCGLHESLKVVSWEPIRCHDA
VDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSRIEPYAIGNVTRLKGHPEPKSDSSGNVP
ILTENNAKVCSGRLAISQNSDPVSKETKSLGRLSVSQNSDPITKEKESKSFASTGSVPGTPQRV
ISNTGPKTTPISSISVPGAATLKRGTGKVHLTANPSFFNGSDVIPVVVPRNNGRFEQAAESRKE
GVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIASDHSETDGFKTTELSGVANRNVFPAVKSSDA
GIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQNDSCSADRTVKFWDLETFELIGSAGPETTGV
RCMAFNPDGRTLLCGLHESLKVVSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVW
VVDLSRIEPYAIGNVTRLKGHPEPKSDSSGNVPILTENNAKVCSGRLAISQNSDPVSKETKSLG
RLSVSQNSDPITKEKESKSFASTGSVPGTPQRVISNTGPKTTPISSISVPGAATLKRGTGKVHL
TANPSFFNGSDVIPVVVPRNNGRFEQAAESRKEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRP
IASDHSETDGFKTTELSGVANRNVFPAVKSSDAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLAS
FQNDSCSADRTVKFWDLETFELIGSAGPETTGVRCMAFNPDGRTLLCGLHESLKVVSWEPIRCH
DAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSRIEPYAIGNVTRLKGHPEPKSDSSGN
VPILTENNAKVCSGRLAISQNSDPVSKETKSLGRLSVSQNSDPITKEKESKSFASTGSVPGTPQ
RVISNTGPKTTPISSISVPGAATLKRGTGKVHLTANPSFFNGSDVIPVVVPRNNGRFEQAAESR
KEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIASDHSETDGFKTTELSGVANRNVFPAVKSS
DAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQNDS(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	55935-51006(-)
Potential amino acid sequence	MAFNPDGRTLLCGLHESLKVVSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVV DLSRIEPYAIGNVTRLKGHPEPKSDSSGNVPILTENNAKVCSGRLAISQNSDPVSKETKSLGRL SVSQNSDPITKEKESKSFASTGSVPGTPQRVISNTGPKTTPISSISVPGAATLKRGTGKVHLTA NPSFFNGSDVIPVVVPRNNGRFEQAAESRKEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIA SDHSETDGFKTTELSGVANRNVFPAVKSSDAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQ NDSCSADRTVKFWDLETFELIGSAGPETTGVRCMAFNPDGRTLLCGLHESLKVVSWEPIRCHDA VDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSRIEPYAIGNVTRLKGHPEPKSDSSGNVP ILTENNAKVCSGRLAISQNSDPVSKETKSLGRLSVSQNSDPITKEKESKSFASTGSVPGTPQRV ISNTGPKTTPISSISVPGAATLKRGTGKVHLTANPSFFNGSDVIPVVVPRNNGRFEQAAESRKE GVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIASDHSETDGFKTTELSGVANRNVFPAVKSSDA GIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQNDSCSADRTVKFWDLETFELIGSAGPETTGV RCMAFNPDGRTLLCGLHESLKVVSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVW VVDLSRIEPYAIGNVTRLKGHPEPKSDSSGNVPILTENNAKVCSGRLAISQNSDPVSKETKSLG RLSVSQNSDPITKEKESKSFASTGSVPGTPQRVISNTGPKTTPISSISVPGAATLKRGTGKVHL TANPSFFNGSDVIPVVVPRNNGRFEQAAESRKEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRP IASDHSETDGFKTTELSGVANRNVFPAVKSSDAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLAS FQNDSCSADRTVKFWDLETFELIGSAGPETTGVRCMAFNPDGRTLLCGLHESLKVVSWEPIRCH DAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSRIEPYAIGNVTRLKGHPEPKSDSSGN VPILTENNAKVCSGRLAISQNSDPVSKETKSLGRLSVSQNSDPITKEKESKSFASTGSVPGTPQ RVISNTGPKTTPISSISVPGAATLKRGTGKVHLTANPSFFNGSDVIPVVVPRNNGRFEQAAESR KEGVAGRMMPLSMQSKTSDFLKLSNIRDDLDRPIASDHSETDGFKTTELSGVANRNVFPAVKSS DAGIPEGEMNAKVDRRIVSGRVGMNLMPEPLASFQNDS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tong et al., 2018

circRNA

Detail information of CSA021108_g_circ3

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