Detail information of CSA021108_g_circ1


General Information
CircRNA Name CSA021108_g_circ1
ID in PlantcircBase csi_circ_003022
Alias Cs-circRNA599
Organism Camellia sinensis
Position chrxpSc0053620: 43618-48208  JBrowse»
Reference genome v1
Type   e-circRNA
Identification method CIRCexplorer, CIRI2
Parent gene CSA021108
Parent gene annotation NA
Parent gene strand -
Alternative splicing CSA021108_g_circ2 CSA021108_g_circ3 CSA021108_g_circ4
Support reads NA
Tissues bud
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered CSA021108.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTCTTATAAGTATCACCTGTGATGCAGATTGGACATACCTCCTTTTTGTCCTTCCGTGGAAC
ACACATCTCTGTTTCCCTTATGCACACGAGTTTCATctgtccatgttgctttcaagaaggcctg
cgaggagtggcaggagataagtgcaaatatccaatgtgataatatcaggtttttctgtcaaaaa
gcttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCCATGTTGCTTTCAAGAAGGCCTGCGAGGAGTGGCAGGAGATAAGTGCAAATATCCAATG
TGATAATATCAGGTTTTTCTGTCAAAAAGCTTATCACATCAGCAAGAACCTGCAAGTTACAGCA
AACAGAAATTTAATTATATGGCTGTATTGAAAAATTAGTTCTGTGAAAATTAAAAAAATATGTA
TATATATAAAAATCTTTGTGCTATCCAAGACACGAGAAAACATAAAACACATCATGAGAAACAC
AAAAAAAGTTAATAGTTGTTCTAAAATGTAATATGAATTTACAGCATGATCAGCCATCTTCTCC
ATCGCACCAATGGCCCCTCTAACATCATGCCTTTCCCAGTATTTGTGGACCATCTGCAAGAAAT
TAGACAGAAACCTTTAGCTAGTAGATCAGTTGTTACTGTACCACCGCTAATTCTGATGAATAAT
AGCTTATTTCAATAAATAATTGATGAGGGCAGTGAAAAGCAAATAACACAATGATTAAACTACC
TTAGATGGTTGTAATCCTCATTTCATAGATCAAGCATTTGCCGTGAGATTTGTATGTAATGATT
CCCATAGAAGAGCTAATAAACTTTTATTGAAGGAACCATGGATCAAAACATCATCCGTGTAAAA
ATTATGGGCTTCCCAATTCGGATTCTCCACTTTGTATCCCCACAAAAAAAAATGATAATAATAA
TAATTCAAGTATACTGATACTTACGTGTATTGTTTCTGCATTGGACAGAATCTGCCAATAACCC
CAATAAATCACACTTTATGCATTGTTACACTCTTATCAACTATGATTTGTACTTATATTATATT
TTGTCTCTTTTCTCCCATAATCCCATTCAAATGAATTTAATTAGAATCTGATTTCTGCCAACAA
ATATTATTGTTTGCTTGTATGAGTATATCATTGTACCAACAAATATTGAATTAAGTTTTGTTTT
ATTGTTATAAATTATCAATTATTTATTCTAGAAGCTTTTTTAATTATCTTAAATAGTAAAAAAA
TCTCTTACTACATGAAATTCTCTATTTTCTTTAGCCTTGAAAACAACATAAAATTCAATAATAT
TTTATAAAACATACTTTAGATCCACAATGTTCATTAGAAACCATTACAAACATTCAAATTGTGA
TAAATAAAGTTAAAACATGCTTATCAACGAGTTTCTCTCTTACTCTTCTGCTTTCATCCCTCGC
TTGTTTCTCTCTCTGGTTCTATGCCACTTATATAAGGTTTTTCCAAAGTCCATCCTTATTTGCT
ACACTGGGGAGTGGGGCCTTTACTCACATTTGCAGACCAGGTGGATCATTATTCCCAACCACAT
AAATTACTTTATTAAATATACTTCACACGCACAGGATCCAACAAATAAGAAAAATATATATCTT
AATAGAAGTACACTGACTCACAGACAAAGAAGATATCCAAAAGAAGAAGAAAAAATTCCAGCAA
CGTAACAAAGGAAAAAAAATAAAACAACGAAGGAACAATTCCAGCAAAGCACTTTCTGTATGAG
AAGATACCAAAAAGAAAACAATTTGCCCACCAAATGTCCAACTTTCAGAAGGAACAAAAATAAA
ATTAAAAAATCTATGATCCCCTTTTTTTTTCAGGGTAAGCTAAAAATCACCTGTAATCTGCCTA
AACGAGACTGCATTGAGCCAACAAAGTGATCATGTTGTTCCATTATCTCCACAATTGCATCCTT
GTCACTAACAGGCAACGTTTCTTTTTCAGGAGATATGGGCCCTCTCTGTTTAGAATTAAGAGAA
TGAAGATATCACTTAGCATGCATGAGAAAGAAAAAGAGGACAACATTAAAAATATATATATTAT
ATATAGGTGACACTATTGAAGGAAAAAATAAGCTAGTTATACAAGTAAATTGATAGATCAAGTG
CTAAAATCAAATCAGTTAATATTTCACTTCCACTGATATCAGGCCTGATTGCATCAGAAATCAA
CTACTACCATTATATAACATTATTATATTGTAATACCCGAGGGATCCATTACTGTTGCACACCA
GAAAAACAGTTCAGCAAACTCACATCTATATTGGCCATTACAAGCTGCCGCAACATCATGGAAG
CATGAAACTAATTTATGTGGTATTCTGAAAAGGCAGTTTACGACCTAAAAAGCTACCTAGAAAA
GAGTCTAATTCTTGTGAGAAGGTGGAAGTATAGTTGGACTTGCTTCAGTTCAGGTTGCAAGCTT
GGGCCTCACTGTCCTTACCTGGGCTTTCACAACTGAATGGTGTGAGAAAAACATAACAACATGG
ACAAGGTATATTTGTAGAAGGGAGGTGCCTTACTCTTATTTTGTGAAAGTTCACTAAAGGAAGG
AAACATCAGCAGTCAATACAAGACAATGTTATGAACGGATTGAACAATTTCCCTGGATTCCTTT
CCCTATGCTCATTTGCGAGCCCTGGCCAGAGCTCTTTTCCTATTGAATTTGCCATCGTATTTAA
AACAGGTTCTTAATCATGCATTCTCACTAGCAAAACATCACATTGCTCTGTTTGGTTTATTGGA
ATGAAGAGGAATTGAATGACCATTCCATCATAACGTCGATTCTGATAGAATGGAGGTGTATTAT
CACTTCACAAAGACATTACTGGGAGAGATAGAGACGAAGTTCATCAAAACAAAGGACCAAGTTG
CAGATATCTTAATGAGGCATTCCAAAAACATGGCATGGTTACCTAAACTACAATGCCAAGGGGG
AGTGTTGAGAGTTCATCACTAACTCTCCTTCCTCTCTCCCCCTCTAGATTTTTTTAGCATCTCA
TATCTCTAGGAGTAAATTCCTCATTACTCGTTTTGCCAACTCAAACTTCATCATTTACCAACTA
CTAATTTTACCTACCTACCTATAAATATGGAATAGCCCTTGTATTTTTATTTTTATTTTTATTT
TTTTGAGAAGCAAATAGCCCTTGTATTGGGTATCATGCAATACAAGAGTGATCTAGTGTGAGCT
GTCCTAGAAGTCTTGTGCAAGGAATACAAGTGTAATTGTGCGTGCCTATGTCTTGTGTGATCAG
TGTGATATGAATATGGTAGTGTAGGTCCAGCCAAGTGGGTGTGGGACCTGTGAGTGGTTGTCAC
ATGAACTTAGTGGAGAGTAATTGAGTGTACAATTGTGTACTTGAGAGAGTTAGTAATAAAAACT
TGGGTAGCGTTTGGTAGAGTTTTCTAAATATGATTTGAGAATAGAGCTGTATTTTGAATTTGTA
AGTTTTGAAATTGTGATTTGAGTGTGGAAAATTGTTTGGTTATGAGTTTTGAATTGAGTTTTGG
AGGAAGATTTTGAGTTTTTGAAACTAGGAAAGTTATTTGATTAAAAAACTTACAACTCATAACC
AATCACACAACTCAAAATTCTATTCAAAACTCATATAAAAATTTAAAAAAAAAAAAAAATCTGA
AAATATTTTTTATTTANGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTATTCCGGT
CAACCGGCCCGACGTCCAGGTTAGCCAAATTTTCCGGCCTGGAAAGGAGTTTTCAAAAGTGGAT
GTGGAATTATAATTTGAAAGCTCAAAATAAACACCACACTCAAATCAGTAGGTGGAAATGTATT
TGGAACACATAACCAAACACAGCCTTGTATTTTTTGGGAGTCAAACTCAACATAATAGCCTCTA
ACCAGATCTGAATAATTGCAGGCTCAGTACTAAAAAAGTTTGACAAGTCCAAGCCTGGCTTCCC
ACAAACTTTTAATCCAATCAATAAAAGAGCACTAGTACCTTTTACAGCACCGTAACATCCCAAA
AAACCTTTAATCCGTGTTCCCAAAATACAATCCAACCAACCCTTTGAACTGTTTAACCAAATTC
TAACCTTAATACCCTTGTGCAATTGTCCAAACACAGATTTAGCATCATCCAGTCATAAGCACAA
GTGTCCCCCATTTCTTTGGTTCACAGTTTATCAAGGGAGAAATTATTTACGTTAGTTTCTTTTT
GTTGATTCCTGAAAAGTGTTGCAGACAAGCTGTTGGCGTTGCTTTGCCAATTTGTTAGCAAATG
TTCAAGTTTACTTTGTGAACCTGAGTGCAATATTGTATACACTATGTGTGCATGGGTTGCACAT
TCTTGAAGCCTTTTGTAATTCGATTCCCAAAAAGACAAAAAGAACTAAAACAAAATATACAGTT
TGCACTTCTACAAGCTTATGTAATTTTCATTGAAGCCATCTACCAGGAGAAAAAAAAAAAAGAA
AGATGAGAAGGGAAGAAATTACAGAATCATAAAGTAATCATACCGCATTAGGTTGGAGCATGCT
AACAACGGGTACTGTCCCAGATAAATTGCTTGAAGCAGGAGCCTCATAATAAGAGTATCTCTCA
CTCTTCTCCCAGTTTGCAACAAGCGAGCGCGTCCTTCCTAGAATAACGGTTGATTGAATGAGTA
AAGCTTCGTTAGATTCTTATAAGTATCACCTGTGATGCAGATTGGACATACCTCCTTTTTGTCC
TTCCGTGGAACACACATCTCTGTTTCCCTTATGCACACGAGTTTCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 47968-48207(-)
48193-43681(+)
Potential amino acid sequence MLQPNARGPISPEKETLPVSDKDAIVEIMEQHDHFVGSMQSRLGRLQMVHKYWERHDVRGAIGA
MEKMADHAVLADVISFLTEKPDIITLDICTYLLPLLAGLLESNMDR*(-)
MHTSFICPCCFQEGLRGVAGDKCKYPM*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tong et al., 2018