Detail information of AT2G44980_circ_g.1


General Information
CircRNA Name AT2G44980_circ_g.1
ID in PlantcircBase ath_circ_018437
Alias Ath_circ_FC1690
Organism Arabidpsis thaliana
Position chr2: 18553147-18553772  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT2G44980
Parent gene annotation Probable helicase CHR10
Parent gene strand -
Alternative splicing 2_circ_igg.3 2_circ_igg.4 2_circ_ag.5 2_circ_ag.6 AT2G44860_circ_g.1 AT2G44860_circ_g.2 AT2G44860_circ_g.3 AT2G44870_circ_g.1 AT2G44900_circ_g.1 AT2G44900_circ_g.2 AT2G44910_circ_g.1 AT2G44910_circ_g.2 AT2G44920_circ_g.1 AT2G44920_circ_g.2 AT2G44920_circ_g.3 AT2G44950_circ_g.1 AT2G44950_circ_g.2 AT2G44950_circ_g.3 AT2G44950_circ_g.4 AT2G44950_circ_g.5 AT2G44950_circ_g.6 AT2G44950_circ_g.7 AT2G44970_circ_g.1 AT2G44970_circ_g.2 AT2G44970_circ_g.3 AT2G44970_circ_g.4 AT2G44970_circ_g.5 AT2G45000_circ_g.1 AT2G45000_circ_g.2 AT2G45000_circ_g.3 AT2G45023_circ_g.1 AT2G45030_circ_g.1 AT2G45030_circ_g.2 AT2G45030_circ_g.3 AT2G45060_circ_g.1 AT2G45060_circ_g.2 AT2G45060_circ_g.3 AT2G45060_circ_g.4 AT2G45060_circ_g.5 AT2G45100_circ_g.1 AT2G45135_circ_g.1 AT2G45140_circ_g.1 AT2G45140_circ_g.2 AT2G45140_circ_g.3 AT2G45160_circ_g.1 AT2G45170_circ_g.1 AT2G45170_circ_g.2 AT2G45170_circ_g.3 AT2G45170_circ_g.4 AT2G45180_circ_g.1 AT2G45180_circ_g.2 AT2G45180_circ_g.3 AT2G45180_circ_g.4 AT2G45180_circ_g.5 AT2G45180_circ_g.6 AT2G45180_circ_g.7 AT2G45180_circ_g.8 AT2G45180_circ_g.9 AT2G45180_circ_g.10 AT2G45180_circ_g.11 AT2G45180_circ_g.12 AT2G45180_circ_g.13 AT2G45180_circ_g.14 AT2G45180_circ_g.15 AT2G45180_circ_g.16 AT2G45190_circ_g.1 AT2G45190_circ_g.2 AT2G45190_circ_g.3 AT2G45200_circ_g.1 AT2G45200_circ_g.2 AT2G45200_circ_g.3 AT2G45200_circ_g.4 AT2G45200_circ_g.5 AT2G45200_circ_g.6 AT2G45240_circ_g.1 AT2G45240_circ_g.2 AT2G45240_circ_g.3 AT2G45240_circ_g.4 AT2G45240_circ_g.5 AT2G45240_circ_g.6 AT2G45240_circ_g.7 AT2G45240_circ_g.8 AT2G45240_circ_g.9 2_circ_ag.10 AT2G45250_circ_g.1 AT2G45250_circ_g.2
Support reads 5
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G44980.1:1
AT2G44980.2:1
AT2G44980.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACCGCAAATCACCACCATCTTCTTCTTTCTCTTCCATGTTATCTCCCACAACATTATGACT
AAGCTGCAACTTTCTCTCTGCCCTCCTCAAAATAACctgaatatgattgctggctcatgagaga
cagttgatggatttgtacagtctccaaagacaaagttaacagatcctgcatctgagctggaatc
aacatcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 626
Transcript exons: 18553147-18553772
CTGAATATGATTGCTGGCTCATGAGAGACAGTTGATGGATTTGTACAGTCTCCAAAGACAAAGT
TAACAGATCCTGCATCTGAGCTGGAATCAACATCATCAGGCAAAATCGGTTCTTCCACGGACAA
AGACTGATAACCGTGTGCTCCCCACGTGGCTAACTTCTTCTCTTCTGCCTTTTTCCTGGCAGCC
TCAATTCTCAGATTTCTTTCCTCAGATAAGTTCTTTCTATTTCCCAACTCAATAATTTTTTCAT
CCTTGCTTGATCGTGCAGCTTCCTTCAATTTCTCAACCCATGAAAGGTAAGAAGCTTCATCAAG
CTCGGAATCCAGACTTGCAGATGATGTATTTCCTAGCAAAGTGTCGCTCGAATTAATTTCAAAC
CTTCTTTCTTCCTTGTCTGGTTCAACGTTTTGACGTATTGCAACAACTTTCTCAGCAAGAGAAC
TTATTTCTACCATTTTCAGGTTATCAGACTCTTCATTGTGAATCTCCTCGGGATCAAACCTTTG
TAAACCAAACACTAGAGACCGCAAATCACCACCATCTTCTTCTTTCTCTTCCATGTTATCTCCC
ACAACATTATGACTAAGCTGCAACTTTCTCTCTGCCCTCCTCAAAATAAC

Genomic sequence CTGAATATGATTGCTGGCTCATGAGAGACAGTTGATGGATTTGTACAGTCTCCAAAGACAAAGT
TAACAGATCCTGCATCTGAGCTGGAATCAACATCATCAGGCAAAATCGGTTCTTCCACGGACAA
AGACTGATAACCGTGTGCTCCCCACGTGGCTAACTTCTTCTCTTCTGCCTTTTTCCTGGCAGCC
TCAATTCTCAGATTTCTTTCCTCAGATAAGTTCTTTCTATTTCCCAACTCAATAATTTTTTCAT
CCTTGCTTGATCGTGCAGCTTCCTTCAATTTCTCAACCCATGAAAGGTAAGAAGCTTCATCAAG
CTCGGAATCCAGACTTGCAGATGATGTATTTCCTAGCAAAGTGTCGCTCGAATTAATTTCAAAC
CTTCTTTCTTCCTTGTCTGGTTCAACGTTTTGACGTATTGCAACAACTTTCTCAGCAAGAGAAC
TTATTTCTACCATTTTCAGGTTATCAGACTCTTCATTGTGAATCTCCTCGGGATCAAACCTTTG
TAAACCAAACACTAGAGACCGCAAATCACCACCATCTTCTTCTTTCTCTTCCATGTTATCTCCC
ACAACATTATGACTAAGCTGCAACTTTCTCTCTGCCCTCCTCAAAATAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.355952175
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a