Detail information of AT2G44920_circ_g.2


General Information
CircRNA Name AT2G44920_circ_g.2
ID in PlantcircBase ath_circ_018423
Alias Ath_circ_FC1689, AT2G44920_C1
Organism Arabidpsis thaliana
Position chr2: 18525731-18526165  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene AT2G44920
Parent gene annotation Thylakoid lumenal 15 kDa protein 1, chloroplastic
Parent gene strand +
Alternative splicing 2_circ_igg.3 2_circ_igg.4 2_circ_ag.5 2_circ_ag.6 AT2G44860_circ_g.1 AT2G44860_circ_g.2 AT2G44860_circ_g.3 AT2G44870_circ_g.1 AT2G44900_circ_g.1 AT2G44900_circ_g.2 AT2G44910_circ_g.1 AT2G44910_circ_g.2 AT2G44920_circ_g.1 AT2G44920_circ_g.3 AT2G44950_circ_g.1 AT2G44950_circ_g.2 AT2G44950_circ_g.3 AT2G44950_circ_g.4 AT2G44950_circ_g.5 AT2G44950_circ_g.6 AT2G44950_circ_g.7 AT2G44970_circ_g.1 AT2G44970_circ_g.2 AT2G44970_circ_g.3 AT2G44970_circ_g.4 AT2G44970_circ_g.5 AT2G44980_circ_g.1 AT2G45000_circ_g.1 AT2G45000_circ_g.2 AT2G45000_circ_g.3 AT2G45023_circ_g.1 AT2G45030_circ_g.1 AT2G45030_circ_g.2 AT2G45030_circ_g.3 AT2G45060_circ_g.1 AT2G45060_circ_g.2 AT2G45060_circ_g.3 AT2G45060_circ_g.4 AT2G45060_circ_g.5 AT2G45100_circ_g.1 AT2G45135_circ_g.1 AT2G45140_circ_g.1 AT2G45140_circ_g.2 AT2G45140_circ_g.3 AT2G45160_circ_g.1 AT2G45170_circ_g.1 AT2G45170_circ_g.2 AT2G45170_circ_g.3 AT2G45170_circ_g.4 AT2G45180_circ_g.1 AT2G45180_circ_g.2 AT2G45180_circ_g.3 AT2G45180_circ_g.4 AT2G45180_circ_g.5 AT2G45180_circ_g.6 AT2G45180_circ_g.7 AT2G45180_circ_g.8 AT2G45180_circ_g.9 AT2G45180_circ_g.10 AT2G45180_circ_g.11 AT2G45180_circ_g.12 AT2G45180_circ_g.13 AT2G45180_circ_g.14 AT2G45180_circ_g.15 AT2G45180_circ_g.16 AT2G45190_circ_g.1 AT2G45190_circ_g.2 AT2G45190_circ_g.3 AT2G45200_circ_g.1 AT2G45200_circ_g.2 AT2G45200_circ_g.3 AT2G45200_circ_g.4 AT2G45200_circ_g.5 AT2G45200_circ_g.6 AT2G45240_circ_g.1 AT2G45240_circ_g.2 AT2G45240_circ_g.3 AT2G45240_circ_g.4 AT2G45240_circ_g.5 AT2G45240_circ_g.6 AT2G45240_circ_g.7 AT2G45240_circ_g.8 AT2G45240_circ_g.9 2_circ_ag.10 AT2G45250_circ_g.1 AT2G45250_circ_g.2
Support reads 15
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G44920.2:3
AT2G44920.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGCTACATCTTGCAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTACTGGAA
ACACATCATTCAAGGGATCAAACATTACAGGCGCAGtccatcctaaggcaagccaacttcaagg
gtgcaaagttgttaggtgctagcttctttgatgcagatctaacaggtttattttcttttcttta
ttgaggta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 217
Transcript exons: 18525731-18525803,18525901-18525962,18526084-18526165
TCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTTTGATGCAG
ATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTCCTTGGCAAATGT
AACAAAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTACTGGAAACACATCATTC
AAGGGATCAAACATTACAGGCGCAG

Genomic sequence TCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTTTGATGCAG
ATCTAACAGGTTTATTTTCTTTTCTTTATTGAGGTAGTAGAAGAACTGTAATAATAGAGACCAC
TTCTCATTCATGGATGTTAAACTCTTATCATGGTGAATCCAGGTGCTGATTTATCGGAAGCTGA
TCTCCGAGGTGCAGATTTCTCCTTGGCAAATGTAACAAAGGTTGTATTCGATGTTACATATACG
TGTTGCTATATGATCTTAAATGTGTATAAAGCTAAGGATAACAAAAAGATCTTTGACATTAATG
GCCCATAATAGTTAAAAATGCTACATCTTGCAGGTGAATCTAACGAACGCTAACTTAGAAGGAG
CGACTGTTACTGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.360630893
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress