Plant Circular RNA Database

Detail information of Os08g0137200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os08g0137200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_035773
					
						Alias
						Os_ciR11463
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 2086268-2088676  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0137225						
					
						Parent gene annotation
						
							Hypothetical protein. (Os08t0137225-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0137100_circ_ag.1 Os08g0137100_circ_ag.2 Os08g0137100_circ_g.3 Os08g0137100_circ_g.4 Os08g0137100_circ_g.5 Os08g0137100_circ_g.6 Os08g0137200_circ_g.1 Os08g0137200_circ_g.3 Os08g0137200_circ_g.4 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0137200-01:6
Os08t0137200-01:6
Os08t0137225-00:5

General Information
CircRNA Name	Os08g0137200_circ_g.2
ID in PlantcircBase	osa_circ_035773
Alias	Os_ciR11463
Organism	Oryza sativa
Position	chr8: 2086268-2088676 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0137225
Parent gene annotation	Hypothetical protein. (Os08t0137225-00)
Parent gene strand	-
Alternative splicing	Os08g0137100_circ_ag.1 Os08g0137100_circ_ag.2 Os08g0137100_circ_g.3 Os08g0137100_circ_g.4 Os08g0137100_circ_g.5 Os08g0137100_circ_g.6 Os08g0137200_circ_g.1 Os08g0137200_circ_g.3 Os08g0137200_circ_g.4
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0137200-01:6 Os08t0137200-01:6 Os08t0137225-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGAAACATTACTGGAATGAGACAATGTTGTCATTTTTTGTGCAGCGGTGGTGGGTCTACTGTG
GTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAGgttgttggttcaattgagcaaacgggag
aaactgatgaagcaaaggcagacaaggaggctgaagctgcatcagattctaagaatggagccaa
acctatgg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 495
Transcript exons: 2086268-2086441,2086528-2086601,2087191-2087271,2087650-
2087710,2087781-2087830,2088622-2088676
GTTGTTGGTTCAATTGAGCAAACGGGAGAAACTGATGAAGCAAAGGCAGACAAGGAGGCTGAAG
CTGCATCAGATTCTAAGAATGGAGCCAAACCTATGGATGTGGACAAAGCCAAGACAAAGCGCAA
ATTGTATGTTGGTCAAGAATTGGAGTTCAGGAGGGATCATATGGAGGTGATTTCACCAATGAAA
GATGGAACAGTTACTGATTGGGATATTGTTGACAATATATGGAATCATGCTTTCAGGCAGCGGC
TATTGATCAATCCTGAGGAGCATCCTATGTTGATAGCTGAACCATCTACAAACACAGGACAGCA
AAGAGAGAAAGCAGCAGAACTTATGTTTGAGAAGTACAAAGTGCCGGCACTGTTCCTAGCGAAA
AATGCAGTTCTCACATCTTTTGCATCTGGACGTGCTACATCGTTGGTAGTTGACAGCGGTGGTG
GGTCTACTGTGGTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAG
						
					

						Genomic sequence
						
							GTTGTTGGTTCAATTGAGCAAACGGGAGAAACTGATGAAGCAAAGGCAGACAAGGAGGCTGAAG
CTGCATCAGATTCTAAGAATGGAGCCAAACCTATGGATGTGGACAAAGCCAAGACAAAGCGCAA
ATTGTATGTTGGTCAAGAATTGGAGTTCAGGAGGGATCATATGGAGGTTAGTTTATGCAGATTC
TCAAGTATCAATATTGATGCTCATGATTTTGTTAACTATTGTTTACTGATTCTCTTCCTACCCA
ATAGGTGATTTCACCAATGAAAGATGGAACAGTTACTGATTGGGATATTGTTGACAATATATGG
AATCATGCTTTCAGGTGAGTTTAACTATCTATTTGATGTAGATCTGAGTAATGTCGTGCCAAAA
GTGCGCGCTGAAAGAGCTGGCCACACTTGTGGCAAAACTTGACTAGAAAATAAATATCTGACAT
GCGGGGCACTTGAGTAACAAGGTTTGGCACATTGCTTGTGTGGTTTGCCAAACACTTGCCAGTT
GCTGCAAAAGGCCAAACATGCCTTCCTTGATTCTGGGGAAGTTTGGGATGAACCATACTCTCTA
TTTAACATAGTTTGCTTAGAATCTGCAACAAAGTTCATCTTCTAGGCCTCTAGGGCATCTTTTG
GATGTCAACATGGTTACTGCTTTATGCCATTGCCCACCATCTTTTTACCTTACATATTAATATT
GTGCTTTTCAAATATACTGATAGTGAAATTCCTTCTTACGTGTACAAACTGGATAAGGCTTTCC
TTCTTGGGTTATTTACTTTTATTGGATTCTGTGGCATCTCTATTAGCTAACATTGATTAAATAC
TAGGATTTCCTCTATATGGTGTGGATATGCAACTATTGAAGTTTCTGCTTTGTTAGCTTTTATC
TTCACACTGACTTGCTCTACATTTCAGGCAGCGGCTATTGATCAATCCTGAGGAGCATCCTATG
TTGATAGCTGAACCATCTACAAACACAGGACAGCAAAGAGAGAAGTATGCCTATATGTTCTGTA
TTTAAATTAATTGTGTTGCTAAGTTGCGTCAAACCTGAAAAACATTGCTTGTTATATGAACTAG
CTGATTTATAGCACATTTATCTTCCATGACTCTTATCAGTCATGAGAACTGTATTGGTACCAGG
ATTTACTGCATGCTTTTCTACTTCTCCATTTAATGTCAGAAATGTTAGTTTTTCTGTGTTTCTG
TACTTCAGGAATGGACAAATATGGAATTGTTGATCACCCTGTAAAACTTATAAATACCAATAAG
CACAAGCTGAGATGATATGAATCCGAGTTATATCTATTCATTGCCTATTATTTTTGTATGGTTC
TATGAAAAAGACCTGACTGTTTTTCTCATGTTCCATAGAGCAGCAGAACTTATGTTTGAGAAGT
ACAAAGTGCCGGCACTGTTCCTAGCGAAAAATGCAGTATGTATTTGTCAAAAGTGATAATTCGT
GTAATTAGTTTATTAGTTCTAATTGTTGATTTGGTTGTCAGGTTCTCACATCTTTTGCATCTGG
ACGTGCTACATCGTTGGTAGTTGACAGGTGAGCATGTCCTTAATTAAATTTTATTTCTGCAGCT
GTAACTTACTGTCTCCTTGTAGATAAAATGTTTCATTTAGCCTTAACTTATAAACAAATGCATT
ATAACTTTTGAATTCTGAAATATTTTTCCACCAGTAAGTGTTAGGGCGTTAGGCACAGTGCACA
AATATTGGGTGTATCTTACCTTGTCAATCCTCCTTAGAATATGATGACAAATGTCCATGGAAGT
AGAAAATGGCTGTTATATCAAAGTCAATCTGTCATGCACAGTATTTCAAATATAAAACCAAACT
ACACATAGACAAACAAGACAAATCCTGTTGAAACTGAACTTAGAAATCAAAAAGCAATTTTTAA
TGACCATCTGCATCATTTTTTATGAAGGATGCGCTTGCATCCAAGGGTGGAAAGCGAGAAACAC
TATCCTTGTCTGTTCTGTCAATCCCACTTCCCACACCATTCAAGAATCAGGACATCAATATTTT
CTTTACTGGTCATCAATATTGTACTTGAGTTGATTGATGCTCTTCTTTCCCCCTTTACTGTATC
ATAAATTCCTAACATCATCTTGGTATAGGGTGTAAGCATAACCATCTAAATTCTTTCAGCATGT
TTTAAGCCATAGTATCTGATTGTCTCAAATTTGATGCCTGACATGTCCACCGATGTCTCTATTG
GACTTTAATGGTGTCAAGCATTTTATGACTTATTTCATTTTTGTTCTCATGGCTTTTGGGCTTT
GTTATGAGAAACATTACTGGAATGAGACAATGTTGTCATTTTTTGTGCAGCGGTGGTGGGTCTA
CTGTGGTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAG
						
					

			
		

Sequences
Splice junction sequence	GAGAAACATTACTGGAATGAGACAATGTTGTCATTTTTTGTGCAGCGGTGGTGGGTCTACTGTG GTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAGgttgttggttcaattgagcaaacgggag aaactgatgaagcaaaggcagacaaggaggctgaagctgcatcagattctaagaatggagccaa acctatgg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 495 Transcript exons: 2086268-2086441,2086528-2086601,2087191-2087271,2087650- 2087710,2087781-2087830,2088622-2088676 GTTGTTGGTTCAATTGAGCAAACGGGAGAAACTGATGAAGCAAAGGCAGACAAGGAGGCTGAAG CTGCATCAGATTCTAAGAATGGAGCCAAACCTATGGATGTGGACAAAGCCAAGACAAAGCGCAA ATTGTATGTTGGTCAAGAATTGGAGTTCAGGAGGGATCATATGGAGGTGATTTCACCAATGAAA GATGGAACAGTTACTGATTGGGATATTGTTGACAATATATGGAATCATGCTTTCAGGCAGCGGC TATTGATCAATCCTGAGGAGCATCCTATGTTGATAGCTGAACCATCTACAAACACAGGACAGCA AAGAGAGAAAGCAGCAGAACTTATGTTTGAGAAGTACAAAGTGCCGGCACTGTTCCTAGCGAAA AATGCAGTTCTCACATCTTTTGCATCTGGACGTGCTACATCGTTGGTAGTTGACAGCGGTGGTG GGTCTACTGTGGTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAG
Genomic sequence	GTTGTTGGTTCAATTGAGCAAACGGGAGAAACTGATGAAGCAAAGGCAGACAAGGAGGCTGAAG CTGCATCAGATTCTAAGAATGGAGCCAAACCTATGGATGTGGACAAAGCCAAGACAAAGCGCAA ATTGTATGTTGGTCAAGAATTGGAGTTCAGGAGGGATCATATGGAGGTTAGTTTATGCAGATTC TCAAGTATCAATATTGATGCTCATGATTTTGTTAACTATTGTTTACTGATTCTCTTCCTACCCA ATAGGTGATTTCACCAATGAAAGATGGAACAGTTACTGATTGGGATATTGTTGACAATATATGG AATCATGCTTTCAGGTGAGTTTAACTATCTATTTGATGTAGATCTGAGTAATGTCGTGCCAAAA GTGCGCGCTGAAAGAGCTGGCCACACTTGTGGCAAAACTTGACTAGAAAATAAATATCTGACAT GCGGGGCACTTGAGTAACAAGGTTTGGCACATTGCTTGTGTGGTTTGCCAAACACTTGCCAGTT GCTGCAAAAGGCCAAACATGCCTTCCTTGATTCTGGGGAAGTTTGGGATGAACCATACTCTCTA TTTAACATAGTTTGCTTAGAATCTGCAACAAAGTTCATCTTCTAGGCCTCTAGGGCATCTTTTG GATGTCAACATGGTTACTGCTTTATGCCATTGCCCACCATCTTTTTACCTTACATATTAATATT GTGCTTTTCAAATATACTGATAGTGAAATTCCTTCTTACGTGTACAAACTGGATAAGGCTTTCC TTCTTGGGTTATTTACTTTTATTGGATTCTGTGGCATCTCTATTAGCTAACATTGATTAAATAC TAGGATTTCCTCTATATGGTGTGGATATGCAACTATTGAAGTTTCTGCTTTGTTAGCTTTTATC TTCACACTGACTTGCTCTACATTTCAGGCAGCGGCTATTGATCAATCCTGAGGAGCATCCTATG TTGATAGCTGAACCATCTACAAACACAGGACAGCAAAGAGAGAAGTATGCCTATATGTTCTGTA TTTAAATTAATTGTGTTGCTAAGTTGCGTCAAACCTGAAAAACATTGCTTGTTATATGAACTAG CTGATTTATAGCACATTTATCTTCCATGACTCTTATCAGTCATGAGAACTGTATTGGTACCAGG ATTTACTGCATGCTTTTCTACTTCTCCATTTAATGTCAGAAATGTTAGTTTTTCTGTGTTTCTG TACTTCAGGAATGGACAAATATGGAATTGTTGATCACCCTGTAAAACTTATAAATACCAATAAG CACAAGCTGAGATGATATGAATCCGAGTTATATCTATTCATTGCCTATTATTTTTGTATGGTTC TATGAAAAAGACCTGACTGTTTTTCTCATGTTCCATAGAGCAGCAGAACTTATGTTTGAGAAGT ACAAAGTGCCGGCACTGTTCCTAGCGAAAAATGCAGTATGTATTTGTCAAAAGTGATAATTCGT GTAATTAGTTTATTAGTTCTAATTGTTGATTTGGTTGTCAGGTTCTCACATCTTTTGCATCTGG ACGTGCTACATCGTTGGTAGTTGACAGGTGAGCATGTCCTTAATTAAATTTTATTTCTGCAGCT GTAACTTACTGTCTCCTTGTAGATAAAATGTTTCATTTAGCCTTAACTTATAAACAAATGCATT ATAACTTTTGAATTCTGAAATATTTTTCCACCAGTAAGTGTTAGGGCGTTAGGCACAGTGCACA AATATTGGGTGTATCTTACCTTGTCAATCCTCCTTAGAATATGATGACAAATGTCCATGGAAGT AGAAAATGGCTGTTATATCAAAGTCAATCTGTCATGCACAGTATTTCAAATATAAAACCAAACT ACACATAGACAAACAAGACAAATCCTGTTGAAACTGAACTTAGAAATCAAAAAGCAATTTTTAA TGACCATCTGCATCATTTTTTATGAAGGATGCGCTTGCATCCAAGGGTGGAAAGCGAGAAACAC TATCCTTGTCTGTTCTGTCAATCCCACTTCCCACACCATTCAAGAATCAGGACATCAATATTTT CTTTACTGGTCATCAATATTGTACTTGAGTTGATTGATGCTCTTCTTTCCCCCTTTACTGTATC ATAAATTCCTAACATCATCTTGGTATAGGGTGTAAGCATAACCATCTAAATTCTTTCAGCATGT TTTAAGCCATAGTATCTGATTGTCTCAAATTTGATGCCTGACATGTCCACCGATGTCTCTATTG GACTTTAATGGTGTCAAGCATTTTATGACTTATTTCATTTTTGTTCTCATGGCTTTTGGGCTTT GTTATGAGAAACATTACTGGAATGAGACAATGTTGTCATTTTTTGTGCAGCGGTGGTGGGTCTA CTGTGGTTGCTGCTGTTCACGATGGTTATGTATTGCAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.231272959

Conservation Information
Conserved circRNAs	NA
PMCS	0.231272959

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2086365-2088673(+)
2088658-2086528(+)
2086339-2088635(-)
						
						Potential amino acid sequence
						
							MDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPML
IAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDG
YVLQKVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEV
ISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPA
LFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKVVGSIEQTGETDEAKADKEAEA
ASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRL
LINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGG
STVVAAVHDGYVLQKVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQE
LEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAE
LMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQK(+)
MVMYCKRLLVQLSKREKLMKQRQTRRLKLHQILRMEPNLWMWTKPRQSANCMLVKNWSSGGIIW
R*(+)
MQLQPPCLPLLHQFLPFAQLNQQPFAIHNHREQQQPQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2086365-2088673(+) 2088658-2086528(+) 2086339-2088635(-)
Potential amino acid sequence	MDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPML IAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDG YVLQKVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEV ISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPA LFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKVVGSIEQTGETDEAKADKEAEA ASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRL LINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGG STVVAAVHDGYVLQKVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQE LEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAE LMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQK(+) MVMYCKRLLVQLSKREKLMKQRQTRRLKLHQILRMEPNLWMWTKPRQSANCMLVKNWSSGGIIW R(+) MQLQPPCLPLLHQFLPFAQLNQQPFAIHNHREQQQPQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0137200_circ_g.2

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