Detail information of BGIOSGA020484_circ_g.7


General Information
CircRNA Name BGIOSGA020484_circ_g.7
ID in PlantcircBase osi_circ_015875
Alias Chr05:30241782_30246299(ZS97RS2), Chr05:30560061_30564577(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 30952072-30956589  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA020484
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA020484_circ_g.1 BGIOSGA020484_circ_g.2 BGIOSGA020484_circ_g.3 BGIOSGA020484_circ_g.4 BGIOSGA020484_circ_g.5 BGIOSGA020484_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA020484-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGAGGACAATATGTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACCAA
GCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAAgatcctgatgaatcaattagtgagctcg
tggagcatttcttccttgttaatcatcctgatcattatctaagacaccaggtaatctttggtaa
aaatttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATT
ATCTAAGACACCAGGTAATCTTTGGTAAAAATTTGTGGATAACTAAGTCAGATGTAGTTCTGTT
GCTTTTCTCTTCTGGGGGTTTCAACAGGTCATCATCTGCTTAGGTAGGAGCTGTGTTTCTAGTT
ATGCTGATTGGCCTAATGCAAATAGATTTTTTTTCTACTCAACAGAACCCCCTTCATATATTAT
CCTTTTCCCACAAATTATTGATGGTTTCAAATGAACCTAATATTAATGTTTGCTAGTTTCATGT
TGAGATTTTTTCCCCCAGATTCTGAGAATAGTCCACATAATAGCCTACCCACAGATTATTTGGA
TATTAATACATAAATATTTTGGTTTTGCCAAGTAACAGGAAAGTTATGATCTCTTGGTTATCTA
GATTTTCATTTAAATAATCATATTCATATGTTAAAGGGTCTAAAAACTGTCTCTCTGTGCTAAC
ACTTCACAGTGCTAATTGCTGAATGAGATTTAGAAGGGTCATATCCAAATTTGTGTATCATATG
CACTTGGGTTTTCTACCCTGACTTCATTGATTTTTTTATTCTTCCTTATACTAATTACTGTATT
TATTCCGTCCTTTTTCTGGCCGATTGTCTATATCTATAGGTGGTTTACAATGCAAATAAACTTG
CTGATCTGGTTGAGAAGAAGAAGAAACTGCAAAATTGGCTTGATTACTACCAGCTCAAGTATGA
AAGAAATCCATCAAAAAGGCCCACCACTAAGGTTAGTCTGCCATATGGACCTTGATCAATTTAT
TTTTCATTTCAATTATAATATTACATTAGGATCTTTTTTCTTTTTAATTCTCTGTCCCCCTGTT
GGATTTTTGTTCCAGACTGGCTTTCTTGGCTGTTTTGGTTCCGAGGTGGATGCCATTGAATACT
ACAAAGCAGAGATTGAGAAGATTGGGAAAGAAGTAAGTTGTACTCCCTCCGTACCGTAATATAA
GGGATTTTGACTTTTTGCTTGCACTGTTTGACCACTCGTCTTATTCAAAAAATTTGTGCAAATA
TAAAAAACGAAAAGTTGTGCTTAAAGTACTTTGGATAATAAAGCAAGTCACAAATAAAATAAAT
AATAATTCCAATTTTTTTTTAATAAGACGAGTGGCATTTTTGTCTATTAATTCCAAATAAATAA
TAATCCCTTATATTACGGGACGGAGGGAGTAGTATTTTTGTCTATATAATCATTGGACCATTCG
GCATTGTCCATTTTTTCTGATTGAGTTGTATCATTCTATGAACATGGGTTTGCACAATCGATTC
TTTTTTAGGATTAGTATTATGTCTAAGCATCACACATTCACACCTTGTGGGAGTTTAATTTGTT
TACAGCTAACAGTCAGATAACAATAAATTCATGTGTAACAACATGCAGGAAGCTGATGAGCGTC
AAAAGATCATGAAGGATCCCCAGTCAGCTGTTCCAGCAGCCTTTGTTTCATTTCGTTCACGGTG
GGGGGCTGCTGTTTGTGCTCAGACACAGCAAACCAGTAATCCAACAGTCTGGATAACTGAATGG
GCTCCAGAACCTCGTGATGTCTACTGGAATAATCTATCCATTCCATTTGTGTCCCTCACAGTTA
GGAGGCTGATAGTTGCTGTGGCATTCTTCTTCCTCAACTTTTTTTATGTCATTCCAATAGCATT
CGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATC
AAAATGTAAGTGTTTCTTCATGTGTTGATTATTTATACTATTATTGCATTTCCATGATTTATTC
AGCGTGTAATTAATTTGGGTACATTAGACATATGGTTATCTTCTGCTATTCTTTTGAAATGCCC
TGATAAATCTTGTTGACTATTGTGCAGTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCA
GGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATACTGATGTTTATGTCTAAGTTTG
AAGGATTAATATCACAGTCATCACTGGAGCGAAGATCTGCATCTAAATATTATATCTTCTTGTT
CTTCAATGTATTTTTGGGAAGCATCGTTACAGGATCTGCTTTAGATCAGCTTAAGGCATACATT
CATCAGTCGGCAAATGAGTAAGTACTCCTATGCCGCCAACTCTACCGACTTGAAAGTTTAGAGA
TTATATACATGCTTGGTTGTTCATTTGAGTCTTCCCATCTTTTAATAGGATGCAGTTTATTTTT
CCTGCTTCGCGGATCTCTGTTTGTTGACAATTGTATTTTTAGCAATTAATTATGGGAGAACACA
GAAAAATCTGGTTCTTGTCGGAGATCACTTTGTTCATGCCGGCTGTCAAATAGATACCAAGTTC
TTAATTCTGTTTTGATTAGTACTGTGGATTATATATTCAGGAGCTACACTTTGTTTGAATATTT
AGACACATAGGCTAAATCAAATATGAAAAAATGGGACCAATCTAGGAAGGACTAGATTGATTTT
GAATTAAGGAGGGGGTGAGGCTCGAACCCGGACCGGCTAGCTCGCAGCTTGCGTTGCTAGCCGG
GAAGGCCCCGGGCCTTTCTCCTTAATCAAATATGTCAAGCAGTGAATTATGATATACATTCTTA
TTAAATAAAACATGTGCTGGTGGTTCAAATAACATCATGAACTCGTGATATATTGGTTCTTAAG
CTATCTTAGAAATAGATAAATTCTTTTGGTTACAGTGAGTTAGACATAAATAGCAACATAATGA
TGCTTAATAGGCAAAAGGGGGGCCATTTGTTGATAGGCTAACTCTGTAGATGCAGAGATTTTGG
CATCAAGGCAAACGCCAAAGCATGGGCCTCAGATACTTACCTCGTGGAAACTCAGATCGTATTT
ATGCTTTCACGTACCGATATTTATGTCCTGCTATTTGTCTGTTTATTTTACAACTCATTCTTCA
CATTCTCTGATTGAAACCAAATGATCATTACAATTTGCAGCAAGTCTAAATTAGTTCTTTTGCA
GAATACCGAGAACCATCGGTGTAGCCATTCCAATGAGGGCGACTTTTTTCATAACATATGTAAT
GGTTGACGGTTGGACTGGTGTAGCTGGTGAAATATTGAGATTGAGGGCACTTATAATCTTCCAT
TTGAAAAACTTTTTCTTGGTGAAGACTGAAAAGGACAGAGAAGAGGCAATGGATCCTGGTAGTA
TCTGTTTTGATTGGTGTGAACCACGTATACAGCTATATTTCTTACTTGGCCTTGTCTATGCTGT
GGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGC
CACCAGGTAAGGACCACTGCAGCTACTTGCGAGAATTTTATTGTGTTAAGTTTTAAGTGATTAT
GATGAACTACTAAATTAGCTTGCTTTGTATGACTATTTAGACCATTTTTCCCTGGTTTATTGGA
AATAAACTTCATTACTGATCGGCACAAACAGTTTCCACTCATGATCAGTGTTGCTATGCTGTTG
TGCATGTGTTAAGGGTATGTAATAATGGCTAAGATTTACTAAGAATATGTGCTTGGATATATTG
TTTTGAGTTCGCCAACACAAGGGAGTATGCTATTGTGATAGATGGACAGTTATGCTAGCTAAAA
GTTACATGCAATAAATCTATCAGAATGGTCATGCAACTAAGGGGCTGTTCAGCTGCCTGGGATG
TGCAAGAACAGTTCCCCAAGCACGAAAATAGCAGCGGGCAGCAGCTTGGCCTGCCGAACAGCCC
GCTAAGATACTTCCATTATCATCAACTGCAAAGCAATTTATATGAAACTGCAGTGATGCAATTA
ATCTACATATGATTCCTAATTTTGCGATATTAATTTTATGATTTAGTTGTGTATATAGTGTTTT
GGTATGCTTACTTGGTTGCACATTTCTTTGAAGATAATAAATGTCTACAATCAACAATACGAGA
GTGGTGCACAGTTTTGGCCGAGTGTGCACGGGCGCATAATCATTGCATTGATCGTATCACAGCT
ACTTCTTATTGGACTGTTGAGTACAAAAGGTTTCGAGGAGACGACACCAGTTCTTGTTGTTCTT
CCTGTGTTGACGTTTTGGTTTTACAAGTACTGCAAGAACCGGTTTGAGCCTGCATTTGTGAGGA
ACCCACTACAGGTAATGTGTGACAGGAAGTTTTGTATACTGAAATGTTTGTTTTGGTTTGGTGG
TAAGAGTGAAATTTGTTGGATGTGCAGGAAGCGATGAGGAAAGACACCCTGGAACGGGCAAGGG
AGCCAACCTTCGATCTGAAAGCGTACCTGGCCAATGCGTACCTGCACCCGGTGTTCAAAGGCAG
GGAGGAGGAGGACAATATGTCAATATCCGAGGATGTCGGGATGGAGGAGGTGATCGTGCCGACC
AAGCGTCAATCTCGCCGGAACACTCCCGCCCAGAGCAA
Conservation Information
Conserved circRNAs osa_circ_029226
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021