Detail information of BGIOSGA016107_circ_ig.3


General Information
CircRNA Name BGIOSGA016107_circ_ig.3
ID in PlantcircBase osi_circ_005375
Alias 4:11766510|11768129
Organism Oryza sativa ssp. indica
Position chr4: 11766510-11768129  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016107_circ_ig.1 BGIOSGA016107_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTGGGCCTTGAATGTGATATGTCTTTTCTCATTATATACATGCTTTAGATAAGGTAGAAGA
CAATATGAAAGAATTATCAAAACAATCATTTACAAGttgaataccatctaaggaccaagtagaa
gtgttatggcgacgtccccaaggaccctcattcttcggattttatcgctaagacatattagatt
tttgatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAATACCATCTAAGGACCAAGTAGAAGTGTTATGGCGACGTCCCCAAGGACCCTCATTCTTC
GGATTTTATCGCTAAGACATATTAGATTTTTGATCTACATGTTTAAAAGGTAAGGCAAGTGTTG
ACTTTCTTGCTGGTTCTGTTTGTGTTCTTCTATAATGTTGGTCAAAAACTTTTAGCATCTTCGG
GGTCAAATGTAGTAAATTTTCTAAGTACATTCCAAATTACTTCATGCTTTGTTATTACTGACCC
ATATTTCTTTCAGTGTGAATGACATCCTAAATTATTTCAGACTTGCAGCTTCTGAACATGGAGC
GATAATTTATTGGTCAGATTATCTTGGGTATTCAATGGATGAACTGGAGATATGTCATAGACTA
AGACTCTAGGTATTGACATCTATTACTCCTAATACACGTGTACAATCCAATTGGTAATACATGT
ATGCTATCATTTCTAAAAGTGTTTCCTCATAAGTTCATTGTATACCAAACTGTTGATATAAATT
AGTCTCTTTAGTAAACTACACTCATTTGTTGCTCTAAAAGCATCGTTTTTGCGTAAGGCAATAA
AATGAGTTTTTTTTTATATCGATGTTCAATGGGTGGTGATATCTCATGGTACTATTTTGTTCAT
ACCATCCAATGACCAATGTGTCTCTGGCTTTTAGGGCTAACTAACAGTATGGCCATTTTACATG
ACCAATGTTTCTAAACATTAGTTTTTGACAGTTTTGATTCTTGCAGTTCAAAGTCCCTGGAAGC
ACATGGAAGAGTTGCAACTGCACAGATTAACATGATTGCCCAATGATTTTGTGAACAAGCTGGA
GGTTCGACAGTACCAGGTTCAGTCTTAAGGTAGGAGTAAGATAATAAACTATTTTTTCTGCCAT
GTCTCTCTTTGCAACTCATTCAGACATGAGTTAATTTAATTTTGGATGTCATATGCATGCATTG
GTCCTTCCACATGTCTGCATGAGTTCTTCCTGTTGAAATCAACAATTAAAGTTGAAGTAAATCA
ACAAATCAGCCATGAATTTTCGTGTTTCTATACGATGTTAACTCACAATAATTTTTTGTGGCAA
GCAGAGGTGAATTAGAAGACCATTTCCCGTTGGGTGGTGTCGTGCTCTTCTCTATGGTGGTCGG
TCTGATTTTGGTGCTTCAGGGCTGTAGGGTACATCAAAATTAGGCCATCCAACACTGTCGGCAA
CGTTCCGTCCTATCCTGGCCCTCCTCTGCCTGTGAGTATTTTGTTCATTCTTCCATCTTTCTGT
CCATGAATTTGGACGAGCTATTGACTTGCTAGGTTCTATATTTCTTCAGAACAGTAATCTTCAG
TGTCATGATGGATATTGAAGGTTGCAAATATCCTCTTATTCGTTTTAGCAACAATCCAATTCTG
CCCATCTGATTTGGAGGTTTGTCATTTCATTTTATTACATTTTTCTAAAAAGAGTTACCACACA
TTTTCCCACTATTTCAGTAACAATAACCTACACATGTACATGCACTTCCCATTGGGCCTTGAAT
GTGATATGTCTTTTCTCATTATATACATGCTTTAGATAAGGTAGAAGACAATATGAAAGAATTA
TCAAAACAATCATTTACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021