Detail information of BGIOSGA016107_circ_ig.1


General Information
CircRNA Name BGIOSGA016107_circ_ig.1
ID in PlantcircBase osi_circ_014218
Alias Chr04:13226492_13227915(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 11766509-11767933  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016107_circ_ig.2 BGIOSGA016107_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGAACAGTAATCTTCAGTGTCATGATGGATATTGAAGGTTGCAAATATCCTCTTATTCGTT
TTAGCAACAATCCAATTCTGCCCATCTGATTTGGAGgttgaataccatctaaggaccaagtaga
agtgttatggcgacgtccccaaggaccctcattcttcggattttatcgctaagacatattagat
ttttgatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAATACCATCTAAGGACCAAGTAGAAGTGTTATGGCGACGTCCCCAAGGACCCTCATTCTT
CGGATTTTATCGCTAAGACATATTAGATTTTTGATCTACATGTTTAAAAGGTAAGGCAAGTGTT
GACTTTCTTGCTGGTTCTGTTTGTGTTCTTCTATAATGTTGGTCAAAAACTTTTAGCATCTTCG
GGGTCAAATGTAGTAAATTTTCTAAGTACATTCCAAATTACTTCATGCTTTGTTATTACTGACC
CATATTTCTTTCAGTGTGAATGACATCCTAAATTATTTCAGACTTGCAGCTTCTGAACATGGAG
CGATAATTTATTGGTCAGATTATCTTGGGTATTCAATGGATGAACTGGAGATATGTCATAGACT
AAGACTCTAGGTATTGACATCTATTACTCCTAATACACGTGTACAATCCAATTGGTAATACATG
TATGCTATCATTTCTAAAAGTGTTTCCTCATAAGTTCATTGTATACCAAACTGTTGATATAAAT
TAGTCTCTTTAGTAAACTACACTCATTTGTTGCTCTAAAAGCATCGTTTTTGCGTAAGGCAATA
AAATGAGTTTTTTTTTATATCGATGTTCAATGGGTGGTGATATCTCATGGTACTATTTTGTTCA
TACCATCCAATGACCAATGTGTCTCTGGCTTTTAGGGCTAACTAACAGTATGGCCATTTTACAT
GACCAATGTTTCTAAACATTAGTTTTTGACAGTTTTGATTCTTGCAGTTCAAAGTCCCTGGAAG
CACATGGAAGAGTTGCAACTGCACAGATTAACATGATTGCCCAATGATTTTGTGAACAAGCTGG
AGGTTCGACAGTACCAGGTTCAGTCTTAAGGTAGGAGTAAGATAATAAACTATTTTTTCTGCCA
TGTCTCTCTTTGCAACTCATTCAGACATGAGTTAATTTAATTTTGGATGTCATATGCATGCATT
GGTCCTTCCACATGTCTGCATGAGTTCTTCCTGTTGAAATCAACAATTAAAGTTGAAGTAAATC
AACAAATCAGCCATGAATTTTCGTGTTTCTATACGATGTTAACTCACAATAATTTTTTGTGGCA
AGCAGAGGTGAATTAGAAGACCATTTCCCGTTGGGTGGTGTCGTGCTCTTCTCTATGGTGGTCG
GTCTGATTTTGGTGCTTCAGGGCTGTAGGGTACATCAAAATTAGGCCATCCAACACTGTCGGCA
ACGTTCCGTCCTATCCTGGCCCTCCTCTGCCTGTGAGTATTTTGTTCATTCTTCCATCTTTCTG
TCCATGAATTTGGACGAGCTATTGACTTGCTAGGTTCTATATTTCTTCAGAACAGTAATCTTCA
GTGTCATGATGGATATTGAAGGTTGCAAATATCCTCTTATTCGTTTTAGCAACAATCCAATTCT
GCCCATCTGATTTGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021