Detail information of Os02g0273000_circ_g.4


General Information
CircRNA Name Os02g0273000_circ_g.4
ID in PlantcircBase osa_circ_014214
Alias NA
Organism Oryza sativa
Position chr2: 9932098-9936741  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0273000
Parent gene annotation Similar to Uridine kinase-like protein. (Os02t0273000-01)
Parent gene strand -
Alternative splicing Os02g0273000_circ_g.2 Os02g0273000_circ_g.3 Os02g0273000_circ_g.5 Os02g0273000_circ_g.6 Os02g0273000_circ_g.7 Os02g0273000_circ_g.8 Os02g0273000_circ_g.9
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os02t0273000-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCA
TCAACTGGTCTTGAACCCATATATTGTTCCAAGAACctgataagtagtctgaatgacatacaaa
ttggggtgtactttacagagatcatgttgaccaagcttagtacgaatatgctgaactattaagt
caattgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATAAGTAGTCTGAATGACATACAAATTGGGGTGTACTTTACAGAGATCATGTTGACCAAGC
TTAGTACGAATATGCTGAACTATTAAGTCAATTGCAACATCATTATCGCCACCTCGTGGGATGA
TAATATCAGCATACTTCTTGGTTGGGAGGATGAAGTCTTCAAAAGCAGGCTTAACAAACTTTGA
GTACTGTAAAACATAAGTAGAATTAAGTGGTTAATTTCAAAAAAGAATCATCAAGGAGATCTGA
CCTAACAACTAAGATTTGTAAACATGTTAAATAAAAACAGCTCTAGTGAGTAAAAAGGTATGTG
ACCATGTAACCTGATCTAGCACAGTTTTGATATCTCTACCCTTCTCAATGGTGTCACGTCGAAT
CCTCCTTGTTAATCGCACATCAGCATCTGAAAATTCAATAGGATGAAATACAATAAAGGACAAC
ACATTCACAGGGTTCAATGGATAGCTACAAACTATTTTTCTTGTGAATTTACAGGCCCTGTCTA
TCAACATACGTAAGTTCAAGATAGTGATAAATTCACAAGAGTGATTAGAAGGATGTCTCTCAAG
TTCTTTAACTAGGGGGCATGCGAAGTGGTAGCCTTGGTTGTTTCCTTCACAGCAGTTTATGCAA
TATACATTTGGCGACATTTGTGACTTCAAAAATAACTCTTTTCGTATTTAAAAAACAAATGAAC
AGTATTTCAAAATATGGAAATAACTAAAAAATTGTGAGTTGATACAAAAGAACTAGTAAATGAA
CAATGAAATCAGTGTTCTAAAAGTCAGCCCTAGGTGCTGGGTAGCCCCCACAATCAGGTATTAG
ATGCCTATATGGTGCATAAGGTCACTCTTGGGTATTCCTGTTGCTATTTAGTGTTATAGTGTCT
AGATTGTGTGTGATATGCTTGCTAATTTCTTGGATTTTACTAGTACCAAGTGTAACTCACTGTC
CAGGAAATAAGTGTACGACAGTAAGAGTGGTCCCTCCGTCCCATTTTAAATGCAGCCATGATTT
TCTGTGCTCAATTTTGATCGTCCGTCTTATTTGAATTTTTTTAAAAAAAATCAAAAACATTAGT
CACGCATAAAGTACTATTCATGTTTTATCATCTAATAATAATAATAATAATACTAATTACAAAA
AAAAATTAAATAAGACGAATGATCAAAGTTAGGCACGGAAACTCATGGTTGCACTTAAAATAGG
ACGGATGGAGTACTTCCAATTCAAATCAAATAGGAGACAACAAAATTACATTATGCACATGTAT
AAACACAAATGTGGATAAAATATGGAAATAATCATACTGACCACACGTACAACTGATGATTACT
GGTCATGGGCAAGAGCTAGAGATAATAAGACAGTTTGGCATGCAAATATTGATACCTGTGTCAA
CAAAGATCTTCATGTTCATCAAATCCCGGACACGTGAATCATGGAAAACCAGAATTCCTTCCAA
AATAATTACATCTGAAGGATTGACCTGACAGAAGTCAAAATATTAGGGTTTCTCTGAAACATAA
AGTAAAACAGATATGGATAAACAAAGAGAAGAATAAACTGTAATCAGTGATCCAATTTTCATGG
ATAAAATAATACTATTTGAAATTGTGAAACAATAAGGTGCTTAGTGTTTACTAGAAACTGCGCC
AATTAAAACTAACTACAATATATTTTAACGAGGTTTATTTAAATATGTGCAACCATAGAGTTAC
TACATTTCAGATATACCACTACAAGGTGGACTTCGATATGCCACTGCTAAGTAGGAAAATTCTG
ACATATGCCATTATGAAACAAACTGGACACAATGTCCTTGTCCTCTCCCTTCGTCCGTTCCATA
TCTACCGTCCCCAACTTCTCCCTCATCAGCCATATCTACCATCCCCAACTTCTGCCTCATCGAC
AGGAAAGGTTGCTTTGCTGAAGGGATGTACTACTTCAGTGACTAGAACTTTCACCAATAATGGT
GTACCCAGCCATGGCCTGTACAATTGGCTTGTCGCCTTGGATAAGTTCTTTTGAGTATTTGTTG
TTAGATATATGCAGTAATGTTATGTGACATAGTTACATGCTTCACAGAGCCCGACAAAAACCAT
GCAGATAAGCTACGAATTTTACTGGAATATACTATCTCCATCCCAAAATATAAGGGATTTTGCC
GATGTAATTATTGGATGGGCAAAATCCCTTATAATCACTCCCATGTCTTCACATTTCCCTTATA
TTTTGGGACGGAGTAAATATCAAATTATTGGATCTTTCGGCATTTCAAAACCATCACTTTTTAA
TGGAAAACTTCTGGTGGCAGATTGTATTAATAGGCATATATGAGTTCCTAACCAAAGCTTAAGC
ACCTACAAAAGGGAAATGAAACTTCTGTGTTCTGACTCCCTAGCTATCCAGCAGACCAGCACAC
AATTTTCAGCTACATTTCTCTTGGACAACTCACAAGATCTGAACGAAGACAAAATGATAGTATG
ATACTCATGAACAATGAAGGTTAGCTCAGGATTACTGCTATGACAATCCTTGTTCTTATGCTCA
TTTTTTTATAGAATACTTTTTTTATAGTTGTCGAGAGTTCAGTCATACTACCACTGTAGTGGTG
GCTTAGATTCCAAGAGGGAATTCAAGCTGTGAAGCCTCACCAGGATGAGACTGTGCTACTCCAA
CAATCACAGCAGCTACGGGAGATGGTGAAGTAGATGAGATATCTCTAATTTTACCTACTCGCTA
GTGTCATATAATAAAGCAACAACTTTGTACTGGCATATCCCAAAAATTAGTAATTATGTAGCAT
GTATCTAAATAACCCTTTCTACAAATATAGCTGCTATTTTAAGGAGAGTTCCTACTAACTTATA
GATCACTCAGTTCATACAGCAGGCATAGATTAGAATCTTAAGGCTTTATTAGAAACTCAGGACG
AGGAAACCTTCAGTTTACCAGGTGAGTAAATTATGATAGCACTGTAAAATAGTAGTACCTTTCT
TGCACTTGCAACACTCTTATATGTTTTGAAGTTGTAATTAGGAATGTCCACAGCCTTGCCATGT
TTCAAGTTCTCCATACAAGAGAGTAGTAACTCCGTATCAAATGCATCTGAAATAAGGACAGCAG
CAGTAGCACCAAAATCAGTGCACAGCTCTAGTCACCAGCATACTTAGGCAAACTTCTTAGGAAT
ATGCATCATACCTGGATGATCAAAGTTATAATCATGAACATGGACCAATTCCTCATCAGACAAC
CCATAATAAAAAGACTCCTGCAAAGAAAGATTGTAAACAAAATATGGCGGCAATATGATATTTA
GCATAAAGGGGGCACATTCTGGTGTCTAGCAATACAGCACGATATACTAATTTGTACAATCTGT
AACAAGCATGTTCGTAGAAAAGTTATCTTGTCATATTTGACACAGTATAAGTAATTAATGGAAA
TAGTATACAATAAACACATAATGCTGGCTTTAAATAGAGCAAATTTTCAGATGCACGATCACAA
AAGTAACAAGATAATAAGGTTAACAGTGCCAATACAGAAAAATAAAGTAGGAGCAACTAGAAAC
TTGCTATGGAAAGCAGGGGGTACTATTCGATCACAATCAGACAGTCATGCCTGCAAGCCTACCA
CTTACAGCAGAAATGAATTATGTGAAGCAGTTAGCAATATAAGTATTATGATCATGGTTCATTG
AAAGAGTGACAAGAAAAATCACTTTTATAACATTAAGAGTTTCGCGATTGAAAAACTAAAAATA
CCAAAAAAGAAACAGTATATATCAAGTATGATGTTACACAATATATCTAAGGCAGAGCAACAAT
TTCAGAAAACAGATACTAGGCACTGTGCCTTAACTGTATTAGCAAAGGTAAAGGTTGTACACTT
GAAATATCATCTCGTGTGCATGATGCTAAACCATGAAATCAGGGAAAACATAATCCCATTTAGA
GGATAAAATGATGTGTACTATATAACTATAGTATCCTAGATCCATGTAATGGATCCAAACATAC
CAATATCTAGGTTCTATTAACGACGAAAATACAAGGTTATTTTATTTGTGATGCGTGAAATATG
GAACAAAGTAACTAAAAAAATGACAGTTCCATGGATGTATTTCACCTTAATACCACATATATTG
AACTAAGAAATATACTATTAGTGGCATATGGTATTCAAAAGAAATTCGGATGACACAAATACCA
CAAGGCAAAAGGGACAAACCTGAGTAACAACAACTACACGCTGATCACGTAGCTGATCGATTAT
CATTTTGCATACAGTACTTTTGCCTGAAGATGCACCCCCGGCAACACCTGTAATCCAAACCAAA
TCAGGGAATGAAACATCGGGAGGCAAAAGGGCTACATTATGTACAACAGTCGATATTTACTGAT
TACTTGCAAAATAAACAGACAAAAACAGCACTGAGCAAGTACTACTAACCAATGACAAATGGCT
CCTGGTGCCCATTCTCCACCCCTGAGGTCGTTGGTTGTTCCTCCCCTGTCATGGAGCCATTGAT
GTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCA
TCAACTGGTCTTGAACCCATATATTGTTCCAAGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.213078074
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017