Plant Circular RNA Database

Detail information of Os02g0273000_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os02g0273000_circ_g.8
					
						ID in PlantcircBase
						osa_circ_014218
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 9935100-9936741  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							Os02g0273000						
					
						Parent gene annotation
						
							Similar to Uridine kinase-like protein. (Os02t0273000-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0273000_circ_g.2 Os02g0273000_circ_g.3 Os02g0273000_circ_g.4 Os02g0273000_circ_g.5 Os02g0273000_circ_g.6 Os02g0273000_circ_g.7 Os02g0273000_circ_g.9 						
					
						Support reads
						2
					
						Tissues
						root, seed
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0273000-01:4

General Information
CircRNA Name	Os02g0273000_circ_g.8
ID in PlantcircBase	osa_circ_014218
Alias	NA
Organism	Oryza sativa
Position	chr2: 9935100-9936741 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	Os02g0273000
Parent gene annotation	Similar to Uridine kinase-like protein. (Os02t0273000-01)
Parent gene strand	-
Alternative splicing	Os02g0273000_circ_g.2 Os02g0273000_circ_g.3 Os02g0273000_circ_g.4 Os02g0273000_circ_g.5 Os02g0273000_circ_g.6 Os02g0273000_circ_g.7 Os02g0273000_circ_g.9
Support reads	2
Tissues	root, seed
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0273000-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCA
TCAACTGGTCTTGAACCCATATATTGTTCCAAGAACctttcttgcacttgcaacactcttatat
gttttgaagttgtaattaggaatgtccacagccttgccatgtttcaagttctccatacaagaga
gtagtaac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTCTTGCACTTGCAACACTCTTATATGTTTTGAAGTTGTAATTAGGAATGTCCACAGCCTTG
CCATGTTTCAAGTTCTCCATACAAGAGAGTAGTAACTCCGTATCAAATGCATCTGAAATAAGGA
CAGCAGCAGTAGCACCAAAATCAGTGCACAGCTCTAGTCACCAGCATACTTAGGCAAACTTCTT
AGGAATATGCATCATACCTGGATGATCAAAGTTATAATCATGAACATGGACCAATTCCTCATCA
GACAACCCATAATAAAAAGACTCCTGCAAAGAAAGATTGTAAACAAAATATGGCGGCAATATGA
TATTTAGCATAAAGGGGGCACATTCTGGTGTCTAGCAATACAGCACGATATACTAATTTGTACA
ATCTGTAACAAGCATGTTCGTAGAAAAGTTATCTTGTCATATTTGACACAGTATAAGTAATTAA
TGGAAATAGTATACAATAAACACATAATGCTGGCTTTAAATAGAGCAAATTTTCAGATGCACGA
TCACAAAAGTAACAAGATAATAAGGTTAACAGTGCCAATACAGAAAAATAAAGTAGGAGCAACT
AGAAACTTGCTATGGAAAGCAGGGGGTACTATTCGATCACAATCAGACAGTCATGCCTGCAAGC
CTACCACTTACAGCAGAAATGAATTATGTGAAGCAGTTAGCAATATAAGTATTATGATCATGGT
TCATTGAAAGAGTGACAAGAAAAATCACTTTTATAACATTAAGAGTTTCGCGATTGAAAAACTA
AAAATACCAAAAAAGAAACAGTATATATCAAGTATGATGTTACACAATATATCTAAGGCAGAGC
AACAATTTCAGAAAACAGATACTAGGCACTGTGCCTTAACTGTATTAGCAAAGGTAAAGGTTGT
ACACTTGAAATATCATCTCGTGTGCATGATGCTAAACCATGAAATCAGGGAAAACATAATCCCA
TTTAGAGGATAAAATGATGTGTACTATATAACTATAGTATCCTAGATCCATGTAATGGATCCAA
ACATACCAATATCTAGGTTCTATTAACGACGAAAATACAAGGTTATTTTATTTGTGATGCGTGA
AATATGGAACAAAGTAACTAAAAAAATGACAGTTCCATGGATGTATTTCACCTTAATACCACAT
ATATTGAACTAAGAAATATACTATTAGTGGCATATGGTATTCAAAAGAAATTCGGATGACACAA
ATACCACAAGGCAAAAGGGACAAACCTGAGTAACAACAACTACACGCTGATCACGTAGCTGATC
GATTATCATTTTGCATACAGTACTTTTGCCTGAAGATGCACCCCCGGCAACACCTGTAATCCAA
ACCAAATCAGGGAATGAAACATCGGGAGGCAAAAGGGCTACATTATGTACAACAGTCGATATTT
ACTGATTACTTGCAAAATAAACAGACAAAAACAGCACTGAGCAAGTACTACTAACCAATGACAA
ATGGCTCCTGGTGCCCATTCTCCACCCCTGAGGTCGTTGGTTGTTCCTCCCCTGTCATGGAGCC
ATTGATGTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGA
ACCTCATCAACTGGTCTTGAACCCATATATTGTTCCAAGAAC
						
					

			
		

Sequences
Splice junction sequence	GTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCA TCAACTGGTCTTGAACCCATATATTGTTCCAAGAACctttcttgcacttgcaacactcttatat gttttgaagttgtaattaggaatgtccacagccttgccatgtttcaagttctccatacaagaga gtagtaac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTCTTGCACTTGCAACACTCTTATATGTTTTGAAGTTGTAATTAGGAATGTCCACAGCCTTG CCATGTTTCAAGTTCTCCATACAAGAGAGTAGTAACTCCGTATCAAATGCATCTGAAATAAGGA CAGCAGCAGTAGCACCAAAATCAGTGCACAGCTCTAGTCACCAGCATACTTAGGCAAACTTCTT AGGAATATGCATCATACCTGGATGATCAAAGTTATAATCATGAACATGGACCAATTCCTCATCA GACAACCCATAATAAAAAGACTCCTGCAAAGAAAGATTGTAAACAAAATATGGCGGCAATATGA TATTTAGCATAAAGGGGGCACATTCTGGTGTCTAGCAATACAGCACGATATACTAATTTGTACA ATCTGTAACAAGCATGTTCGTAGAAAAGTTATCTTGTCATATTTGACACAGTATAAGTAATTAA TGGAAATAGTATACAATAAACACATAATGCTGGCTTTAAATAGAGCAAATTTTCAGATGCACGA TCACAAAAGTAACAAGATAATAAGGTTAACAGTGCCAATACAGAAAAATAAAGTAGGAGCAACT AGAAACTTGCTATGGAAAGCAGGGGGTACTATTCGATCACAATCAGACAGTCATGCCTGCAAGC CTACCACTTACAGCAGAAATGAATTATGTGAAGCAGTTAGCAATATAAGTATTATGATCATGGT TCATTGAAAGAGTGACAAGAAAAATCACTTTTATAACATTAAGAGTTTCGCGATTGAAAAACTA AAAATACCAAAAAAGAAACAGTATATATCAAGTATGATGTTACACAATATATCTAAGGCAGAGC AACAATTTCAGAAAACAGATACTAGGCACTGTGCCTTAACTGTATTAGCAAAGGTAAAGGTTGT ACACTTGAAATATCATCTCGTGTGCATGATGCTAAACCATGAAATCAGGGAAAACATAATCCCA TTTAGAGGATAAAATGATGTGTACTATATAACTATAGTATCCTAGATCCATGTAATGGATCCAA ACATACCAATATCTAGGTTCTATTAACGACGAAAATACAAGGTTATTTTATTTGTGATGCGTGA AATATGGAACAAAGTAACTAAAAAAATGACAGTTCCATGGATGTATTTCACCTTAATACCACAT ATATTGAACTAAGAAATATACTATTAGTGGCATATGGTATTCAAAAGAAATTCGGATGACACAA ATACCACAAGGCAAAAGGGACAAACCTGAGTAACAACAACTACACGCTGATCACGTAGCTGATC GATTATCATTTTGCATACAGTACTTTTGCCTGAAGATGCACCCCCGGCAACACCTGTAATCCAA ACCAAATCAGGGAATGAAACATCGGGAGGCAAAAGGGCTACATTATGTACAACAGTCGATATTT ACTGATTACTTGCAAAATAAACAGACAAAAACAGCACTGAGCAAGTACTACTAACCAATGACAA ATGGCTCCTGGTGCCCATTCTCCACCCCTGAGGTCGTTGGTTGTTCCTCCCCTGTCATGGAGCC ATTGATGTTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGA ACCTCATCAACTGGTCTTGAACCCATATATTGTTCCAAGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011531 osi_circ_009482 						
					
						PMCS
						0.222280024

Conservation Information
Conserved circRNAs	osi_circ_011531 osi_circ_009482
PMCS	0.222280024

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0273000_circ_g.8

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