Detail information of orai.013G160900_circ_g.2


General Information
CircRNA Name orai.013G160900_circ_g.2
ID in PlantcircBase gra_circ_001414
Alias Chr13:43776389|43779503
Organism Gossypium raimondii
Position chrChr13: 43776389-43779503  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.013G160900
Parent gene annotation NA
Parent gene strand -
Alternative splicing orai.013G160900_circ_g.1 orai.013G160900_circ_g.3
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.013G160900.1:12
Gorai.013G160900.2:12
Gorai.013G160900.3:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACCTTCTGTAGCTCTGGTTTAACAAATGTTTCACCAGACGGAGTTCTGTTAACACATTCTGG
TGGGAGGTTGAGTTTGCGAACATCTTCAGGAGTCACcaaattagcgctttgcagccaatacaac
taagttgtttctttgcaaatttcattattccactgtttgacggagttgatatggaaatggatct
tgtgtgac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1187
Transcript exons: 43776389-43776549,43776630-43776719,43776817-43776891,43
777283-43777354,43777478-43777650,43777731-43777845,4377
8200-43778313,43778608-43778687,43778803-43778890,437790
13-43779069,43779207-43779272,43779408-43779503
CAAATTAGCGCTTTGCAGCCAATACAACTAAGTTGTTTCTTTGCAAATTTCATTATTCCACTGT
TTGACGGAGTTGATATGGAAATGGATCTTGTGTGACTCCCATGGAGAAGTTCCTTGCTAGCATT
CTTTAAAATGGGCTCAAAAATTCTTAAAAGTGGCTTGCTAATTTGATTTTCAAGGTAATATTGA
GGATCTATGGGGATGTTATTTTCTAGCACATAGATTGGGTCCTCTGACCTCTCATAAGCCTTGG
CGCCTTTTGCAGCTTTAATAATGACATAAGGCACCCGATCCCCAACATTTGGAGCAGTCGCAGG
ATCTCGCTTGCGCATACGTTCAGCAAGTTCAACATGAGCAGCTTTTACCTCATAATCATCTCCA
GTTTTTGTCAGACCCTTAGTAATAACCAAAAGTGACAAATCCATCCGATTCATGAGAAGATCTG
AAATGGTATTCTTGACATATTGAACTGCACCAGGAATATCTCTATCAATCAGTATTTTGTGCAG
GCATTCAGTTACAAGGTTTTTGACCAATAAACAATTGTCTCTTCGAACAGTTTCGATGCCTTTA
GTGTCCATTTTGTCAAACTTTTGTGGATTTGTCCAATATAAACCAGCATATCTTTTCTTGCTAA
TCAAAAGATAGGGATAATAAACCTTCTCAAACTCTAGCTTGATGGGTTTTGTAAAAGTTCCACT
GATGTGTTCTGCAGCTTCTCTCCCCAAGTTCATTGCTGCTTCTACATCAGACACACCAAATTGT
ACCATCACCGAATCTGTGTCCCCATATATAACCTCAGCATTGTGTTCATAGCCTCCTAGCACTG
TAAATTTATCTTCAACAAGCTTCTTGGTGTGCTCAATCATTTGGCGACCATAGCTTGTAACACT
CGAAGAAATCTCTAAACATGGTAACTGACCAACAGTAGCTCCTGTAAATCCATATACAGAATTT
GCACTTACCTTCAAGGCCAGCTGTCGGCCATCTAGAACAGCTTTCTCAAGTGGATCCTTTGCTT
CCTTCAAATCAGCTTTTGCTCGTTTACGAGCAGCTAATAGCTCTTCCAATATTTCTGGAAGTAT
CCCCTTCTGTAGCTCTGGTTTAACAAATGTTTCACCAGACGGAGTTCTGTTAACACATTCTGGT
GGGAGGTTGAGTTTGCGAACATCTTCAGGAGTCAC

Genomic sequence CAAATTAGCGCTTTGCAGCCAATACAACTAAGTTGTTTCTTTGCAAATTTCATTATTCCACTGT
TTGACGGAGTTGATATGGAAATGGATCTTGTGTGACTCCCATGGAGAAGTTCCTTGCTAGCATT
CTTTAAAATGGGCTCAAAAATTCTTAAAAGTGGCTGTTACATTAATACAATTGTTAAAACAAGG
GAAAATTTTGTCATAGACTAAACTGAAACGATTAAACCACTAAACCAACCTTGCTAATTTGATT
TTCAAGGTAATATTGAGGATCTATGGGGATGTTATTTTCTAGCACATAGATTGGGTCCTCTGAC
CTCTCATAAGCCTGAATTCATAGACAGTATTTGATACCAGGATATATAAATAATACAATCATTT
GCAATAGTTCTATTTTTTTATGAAAAAATCATCAACAAGATTACCTTGGCGCCTTTTGCAGCTT
TAATAATGACATAAGGCACCCGATCCCCAACATTTGGAGCAGTCGCAGGATCTCGCTGTCAAGT
ATAGAGAAAAAGTTCATCCTAATGCTCTAATATCAATCAGCATTTTATAGAGGATATCAAACAG
GCGGCCTTAGAAGAAAGCAACTACAACTGAAATCTGGTAAAGGCAACAGCGCATTATCTCATTT
AGAAATTGAAAAATAGTAGCAATCATTATTGCATCTAACAATTATCTAGAAATATATGATAACA
TGCAAACTCAGCATAAAACTTACAGTAAGCACATGCAATATTAGACTGTTTAACAAGTATCTAA
AGAAATTAAACATAAGTCATCTGAAGACAATGCTACCACCATATATATAAGTATTACAATTAGG
TACCTCAAACATATATTATACGTAGCATGCTGAAATATACCAAGAAAAAGCATAATACAAACCT
TGCGCATACGTTCAGCAAGTTCAACATGAGCAGCTTTTACCTCATAATCATCTCCAGTTTTTGT
CAGACCCTGTACATAGGAGCAGGAACAAACAGCTAAAATAAAGACAGACACAAATTTAGACCAA
GCATTACAAAATCTTCACAGTGACTAAAGCATCATTAAACCAGGAATAAAGGATACTCTTGTCA
CCTTAGTAATAACCAAAAGTGACAAATCCATCCGATTCATGAGAAGATCTGAAATGGTATTCTT
GACATATTGAACTGCACCAGGAATATCTCTATCAATCAGTATTTTGTGCAGGCATTCAGTTACA
AGGTTTTTGACCAATAAACAATTGTCTCTTCGAACAGTTTCGATGCCTGTTCATGATGAAAGAT
GAATTAGCATTCAAGTTCAATGAAAATTTCAGAAGTCCACATGGTTGAGGTTTCTTGTTTACCT
TTAGTGTCCATTTTGTCAAACTTTTGTGGATTTGTCCAATATAAACCAGCATATCTTTTCTTGC
TAATCAAAAGATAGGGATAATAAACCTTCTCAAACTCTAGCTTGATGGGCTAAAAACACCAAAC
CAATATAGAAAAAGGAAAAAAAAAAAAAAGAACAGAAAATGAAGACAATATTAACAACAGATAA
ACCAAGAAGTAACCAGAAGTTGACAAAAAACACAAAAATTAACTTTAAGTGATAATTTGCTACG
AATGAGATTATTAACATCCATGGCCCTAGAGGTAGCCGCCACGTTTACATTATGATTCAAGATG
AGAGCTGACCAGAATATTATAACCAAGTGTAACACATTACGGCTCAGACAGTTGCAGAACACTT
CCCCTTCCTATTTAAACACTGGGCAATTAGGGTTTCTTCAATTTTAAAAGATGTGGCACTATTT
ACTATAAAAGAAGTCTTACTTTTGTAAAAGTTCCACTGATGTGTTCTGCAGCTTCTCTCCCCAA
GTTCATTGCTGCTTCTACATCAGACACACCAAATTGTACCATCACCGAATCTGTGTCCCCATAT
ATAACCTGATTATAAAAAATTATTTAGTATGATTTCTGCCACAATATCCGCAACAATAATGTGA
TGCAAGACTATCAAGCAACAATAAGTACACATATGCAGGCCCAAATACTGTATCATTCTAATCT
CCTTGGCCAGGCGAGAAAATTAAACTTCCAAGAACCAGGTAAGACAAAGCAGCCTTAACTTGGG
GAAGCTGAAATAGATAAATATGAAAGGAAAGATGATCCATGTTATGGATGCATCAGAAACTATT
TTTTTTAAATGATCCTATAACTAGAGCTTTTGGGATGACTTACCTCAGCATTGTGTTCATAGCC
TCCTAGCACTGTAAATTTATCTTCAACAAGCTTCTTGGTGTGCTCAATCATTTGGCGACCTTTA
CAAGGCAAACAACATGTTAGATCAAACAAAACTAGAATAATGCATTTTAAATCATTTATAGGGA
AGGGAATTTTTTTAGCAGTGCTGTTAATAAGAACATTTTATTGTACCATAGCTTGTAACACTCG
AAGAAATCTCTAAACATGGTAACTGACCAACAGTAGCTCCTGTAAATCCATATACAGAATTTGC
ACTTACCTGAAACAAATAATAAATCAGATCAAAGTAATGAAAAGCATACATGGAAACATTTATT
TTAACCCCTGAATGCAATAATTACCATTTGAAAACGGATGATAAGAAAAAAGTAATGATCCTAC
CTTCAAGGCCAGCTGTCGGCCATCTAGAACAGCTTTCTCAAGTGGATCCTTTGCTTCCTACATT
CATATAAAGAATATGAGTAAAGAAATGGAGGCAAAGAAGAAATCCAAGAGAAGACTTAATATTT
TGATGGCACAATATAGAACCAATAGGAAGCAGAACTGTGCAATTAAAATAAAATTATTGTAATC
ACCTTCAAATCAGCTTTTGCTCGTTTACGAGCAGCTAATAGCTCTTCCAATATTTCTGGAAGTA
TCCCCTGAAGATTTTCATTCTTCTAATCAGTTAGATTTTCGGTATTCATCAACAAGAAAATAAA
ATAAAACCTCTAAAGTTTACTTATTTATAGAGGAAATAATCGTCCATGACAAAATTGACATTTT
AATAATATAACCTTCTGTAGCTCTGGTTTAACAAATGTTTCACCAGACGGAGTTCTGTTAACAC
ATTCTGGTGGGAGGTTGAGTTTGCGAACATCTTCAGGAGTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.798812945
Functional Information
Coding potential Y
Potential coding position 43778680-43779502(-)
Potential amino acid sequence MIEHTKKLVEDKFTVLGGYEHNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHISGTFTKPI
KLEFEKVYYPYLLISKKRYAGLYWTNPQKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDR
DIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDPATAPNVG
DRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLH
GSHTRSISISTPSNSGIMKFAKKQLSCIGCKALIW*(-)
Sponge-miRNAs gra-miR8661
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b