Detail information of Os06g0129400_circ_g.5


General Information
CircRNA Name Os06g0129400_circ_g.5
ID in PlantcircBase osa_circ_029508
Alias Os_ciR1747
Organism Oryza sativa
Position chr6: 1556450-1558465  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os06g0129400
Parent gene annotation Splicing variant of SPX-MFS protein 3 (Os06t0129400-01);Vacuolar
phosphate efflux transporter, Pi homeostasis (Os06t0129400-02)
Parent gene strand +
Alternative splicing Os06g0129400_circ_g.1 Os06g0129400_circ_g.2 Os06g0129400_circ_g.3 Os06g0129400_circ_g.4 Os06g0129400_circ_g.6 Os06g0129400_circ_g.7 Os06g0129400_circ_g.8 Os06g0129400_circ_g.9
Support reads 9/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0129400-01:5
Os06t0129400-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCAGCAGTATTGTTCTTTTCTTGGGTAATGTCTGCTACGCAATGGCATATGATATGAAGTC
CCTAACAGTCCTCATTATTGGCCGTCTACTCTGTGGtttaatatctccaagtcaagatggttaa
ctttgggaagaaattgatggctgatcaaattccggaatggaaagggtatgattcagggctttta
ttacttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1069
Transcript exons: 1556450-1556522,1556742-1556862,1557339-1557650,1557805-
1557909,1558008-1558465
TTTAATATCTCCAAGTCAAGATGGTTAACTTTGGGAAGAAATTGATGGCTGATCAAATTCCGGA
ATGGAAAGGGTACTACATAAACTACAAGTTGATGAAGAAGAAAGTAAAACAGTACGGGCAGCAG
GTTCAACAGGGTGAGAAAGATCGTCGCCGGGTTCTTAAGGATTTCTCGAAGATGCTTGATGATC
AGATTGAGAAGATTGTCCTATTTCTGTTGGAGCAACAAGGAGCGTTGGCAAGCAGGATAGAGAA
ATTAGGAAAGCAAAGGGCAATATTAGCAGAACAGCCAGATATATCTGCCATTGCTGAGTTGCGA
GAAGCTTACAGGGAAGTTGGCCTGGATCTTATCAAACTTCTCAAATTTGTTGATCTCAATGCGA
CTGGCATTCGGAAAATTTTGAAGAAGTTTGACAAGCGTTTCGGCTACAGATTTACTGATTACTA
TGTGACAAGTAGATCGAATCACCCATATTCTCAGCTACAGCAGGTCTTCAAGCATGTGGGTGTT
GGAGCTGTTGTTGGAGCGTTGTCACGTAACCTTGCTGACCTTCAAGAGCGGCAGGGAAGTTACT
TGTCAATTTACGATCAGCCATCTACTGCTCTTAAGGACCCAATCATTGATATGATAAATTCATC
AGTGGATAAGCTAACACGCTCAACAAATTTTCTTAGATTTTTGGGGCAACATGCCCTAATTGTT
GGTGAGGAGTCTCCTAGTACTGCAGAGGAAGAAGAAATAGAAGATCAAAAATACCATTTCATGT
CCCTTATGCTGAACTTGGTGAACACATTCCTTTACATGGTCAACACATATATCATTGTCCCGAC
TGCAGATGACTACTCAGTGAGCCTTGGGGCTGCTTCCACTGTTTGTGGTGTTGTTATTGGTTCG
ATGGCTGTTGCGCAAATATTTTCCTCAGTTTACTTCAGCGCATGGTCCAACAAGTCATATTTCA
GACCACTTATTTTCAGCAGTATTGTTCTTTTCTTGGGTAATGTCTGCTACGCAATGGCATATGA
TATGAAGTCCCTAACAGTCCTCATTATTGGCCGTCTACTCTGTGG

Genomic sequence TTTAATATCTCCAAGTCAAGATGGTTAACTTTGGGAAGAAATTGATGGCTGATCAAATTCCGGA
ATGGAAAGGGTATGATTCAGGGCTTTTATTACTTTAATTTTTATGGACCATTCTACGCTTACCA
GTTCTGTAAATATCATCAGTCTTCCACCCCTCACCAGATAATTTTTTCTATGGAAACTTATTAT
TTTTTTCTTAACAAACCTGATAGTCTAATGATACATTGAAATAGTTGATACTTAGTTACCGAAA
TTTAGCTTTGCCTCTTTTTTATACCGATGTTTCCAGGTACTACATAAACTACAAGTTGATGAAG
AAGAAAGTAAAACAGTACGGGCAGCAGGTTCAACAGGGTGAGAAAGATCGTCGCCGGGTTCTTA
AGGATTTCTCGAAGATGCTTGATGATCAGGTAATGCCAAGAGATAGATGCTATGAAAAGCCATT
ACTTCATTCTCCCTGATCTGCTTTAATTGCAGACTTTAGCTTCTCTGTGGATATTTAGCTTGCT
GAGTGTAGCATCAACATGGTGAGCATGTGTAATCTGTATGTCAGTGTTTACCCACATATGCTCA
TATATCAAATTATCCATGCATGGCCTTTCTAAGCAAAGGAATTTCAATAGTTTTATTTTAAATA
AACTGTAGCGGAGTTTTGTCACCAATTTTCTTGTAGAAACTGAGTAATACTATCAAAATGTTAC
AAGCCAACAGTTCTAGTTGACGACTTACTGTTCTTTATTTTTTTTCTTTCTGGTGCTCACATGT
GAGCCCTGTTTTCACCTGGTTCCATCCCTTGTGCGAGATTTTGATGCAACAAATTTATCTAATT
GACCATACTAAAATTTGTGTTTTACATTACTGATGTTCTGTTTTCCTGTGGCATCAGATTGAGA
AGATTGTCCTATTTCTGTTGGAGCAACAAGGAGCGTTGGCAAGCAGGATAGAGAAATTAGGAAA
GCAAAGGGCAATATTAGCAGAACAGCCAGATATATCTGCCATTGCTGAGTTGCGAGAAGCTTAC
AGGGAAGTTGGCCTGGATCTTATCAAACTTCTCAAATTTGTTGATCTCAATGCGACTGGCATTC
GGAAAATTTTGAAGAAGTTTGACAAGCGTTTCGGCTACAGATTTACTGATTACTATGTGACAAG
TAGATCGAATCACCCATATTCTCAGCTACAGCAGGTCTTCAAGCATGTGGTAATGTACTGACTC
CAGATTAAAGTATCATCAAATTTTTATACTGCTTTTCATTTGCATTGTATTGTACTATTTGCAT
CTATGGATCTGTGATCTTGCCTTTTGAATTCCATGAAACACAAACCAGTATAACTTACACGTTT
TATGCAACCAGGGTGTTGGAGCTGTTGTTGGAGCGTTGTCACGTAACCTTGCTGACCTTCAAGA
GCGGCAGGGAAGTTACTTGTCAATTTACGATCAGCCATCTACTGCTCTTAAGGTTCGTTCATCT
TTTTTGCTGCTATCCTGTACGAAAAATGATAGAATAGCTTGTTATAGGGACTTCATTTTTACTG
AGTTGTTCTTGATTCGTCGCAGGACCCAATCATTGATATGATAAATTCATCAGTGGATAAGCTA
ACACGCTCAACAAATTTTCTTAGATTTTTGGGGCAACATGCCCTAATTGTTGGTGAGGAGTCTC
CTAGTACTGCAGAGGAAGAAGAAATAGAAGATCAAAAATACCATTTCATGTCCCTTATGCTGAA
CTTGGTGAACACATTCCTTTACATGGTCAACACATATATCATTGTCCCGACTGCAGATGACTAC
TCAGTGAGCCTTGGGGCTGCTTCCACTGTTTGTGGTGTTGTTATTGGTTCGATGGCTGTTGCGC
AAATATTTTCCTCAGTTTACTTCAGCGCATGGTCCAACAAGTCATATTTCAGACCACTTATTTT
CAGCAGTATTGTTCTTTTCTTGGGTAATGTCTGCTACGCAATGGCATATGATATGAAGTCCCTA
ACAGTCCTCATTATTGGCCGTCTACTCTGTGG
Conservation Information
Conserved circRNAs NA
PMCS 0.331967055
Functional Information
Coding potential Y
Potential coding position 1556471-1556474(+)
Potential amino acid sequence MVNFGKKLMADQIPEWKGYYINYKLMKKKVKQYGQQVQQGEKDRRRVLKDFSKMLDDQIEKIVL
FLLEQQGALASRIEKLGKQRAILAEQPDISAIAELREAYREVGLDLIKLLKFVDLNATGIRKIL
KKFDKRFGYRFTDYYVTSRSNHPYSQLQQVFKHVGVGAVVGALSRNLADLQERQGSYLSIYDQP
STALKDPIIDMINSSVDKLTRSTNFLRFLGQHALIVGEESPSTAEEEEIEDQKYHFMSLMLNLV
NTFLYMVNTYIIVPTADDYSVSLGAASTVCGVVIGSMAVAQIFSSVYFSAWSNKSYFRPLIFSS
IVLFLGNVCYAMAYDMKSLTVLIIGRLLCGLISPSQDG*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017