Detail information of Os06g0129400_circ_g.2


General Information
CircRNA Name Os06g0129400_circ_g.2
ID in PlantcircBase osa_circ_029505
Alias NA
Organism Oryza sativa
Position chr6: 1556450-1556862  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0129400
Parent gene annotation Splicing variant of SPX-MFS protein 3 (Os06t0129400-01);Vacuolar
phosphate efflux transporter, Pi homeostasis (Os06t0129400-02)
Parent gene strand +
Alternative splicing Os06g0129400_circ_g.1 Os06g0129400_circ_g.3 Os06g0129400_circ_g.4 Os06g0129400_circ_g.5 Os06g0129400_circ_g.6 Os06g0129400_circ_g.7 Os06g0129400_circ_g.8 Os06g0129400_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0129400-01:2
Os06t0129400-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGAAGAAGAAAGTAAAACAGTACGGGCAGCAGGTTCAACAGGGTGAGAAAGATCGTCGCCGG
GTTCTTAAGGATTTCTCGAAGATGCTTGATGATCAGtttaatatctccaagtcaagatggttaa
ctttgggaagaaattgatggctgatcaaattccggaatggaaagggtatgattcagggctttta
ttacttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 194
Transcript exons: 1556450-1556522,1556742-1556862
TTTAATATCTCCAAGTCAAGATGGTTAACTTTGGGAAGAAATTGATGGCTGATCAAATTCCGGA
ATGGAAAGGGTACTACATAAACTACAAGTTGATGAAGAAGAAAGTAAAACAGTACGGGCAGCAG
GTTCAACAGGGTGAGAAAGATCGTCGCCGGGTTCTTAAGGATTTCTCGAAGATGCTTGATGATC
AG

Genomic sequence TTTAATATCTCCAAGTCAAGATGGTTAACTTTGGGAAGAAATTGATGGCTGATCAAATTCCGGA
ATGGAAAGGGTATGATTCAGGGCTTTTATTACTTTAATTTTTATGGACCATTCTACGCTTACCA
GTTCTGTAAATATCATCAGTCTTCCACCCCTCACCAGATAATTTTTTCTATGGAAACTTATTAT
TTTTTTCTTAACAAACCTGATAGTCTAATGATACATTGAAATAGTTGATACTTAGTTACCGAAA
TTTAGCTTTGCCTCTTTTTTATACCGATGTTTCCAGGTACTACATAAACTACAAGTTGATGAAG
AAGAAAGTAAAACAGTACGGGCAGCAGGTTCAACAGGGTGAGAAAGATCGTCGCCGGGTTCTTA
AGGATTTCTCGAAGATGCTTGATGATCAG
Conservation Information
Conserved circRNAs osi_circ_006484*
PMCS 0.1984159
Functional Information
Coding potential Y
Potential coding position 1556471-1556491(+)
Potential amino acid sequence MVNFGKKLMADQIPEWKGYYINYKLMKKKVKQYGQQVQQGEKDRRRVLKDFSKMLDDQFNISKS
RWLTLGRN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017