Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0129400_circ_g.2 |
ID in PlantcircBase | osa_circ_029505 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 1556450-1556862 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0129400 |
Parent gene annotation |
Splicing variant of SPX-MFS protein 3 (Os06t0129400-01);Vacuolar phosphate efflux transporter, Pi homeostasis (Os06t0129400-02) |
Parent gene strand | + |
Alternative splicing | Os06g0129400_circ_g.1 Os06g0129400_circ_g.3 Os06g0129400_circ_g.4 Os06g0129400_circ_g.5 Os06g0129400_circ_g.6 Os06g0129400_circ_g.7 Os06g0129400_circ_g.8 Os06g0129400_circ_g.9 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0129400-01:2 Os06t0129400-02:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006484* |
PMCS | 0.1984159 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1556471-1556491(+) |
Potential amino acid sequence |
MVNFGKKLMADQIPEWKGYYINYKLMKKKVKQYGQQVQQGEKDRRRVLKDFSKMLDDQFNISKS RWLTLGRN*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |