Detail information of Os04g0577500_circ_g.1


General Information
CircRNA Name Os04g0577500_circ_g.1
ID in PlantcircBase osa_circ_024975
Alias Os04circ11917
Organism Oryza sativa
Position chr4: 29115851-29117841  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os04g0577500
Parent gene annotation Deoxyribonuclease, TatD Mg-dependent domain containing protein.
(Os04t0577500-01);Deoxyribonuclease, TatD Mg-dependent domain co
ntaining protein. (Os04t0577500-02)
Parent gene strand -
Alternative splicing NA
Support reads 2/1
Tissues leaf and panicle/root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0577500-01:5
Os04t0577500-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATCATATAAAACAAGAAGTGAAGAAGGAAAAATGCTAATTACAAACCTGTTCTCCAAAGTC
AATGGTTTTTCCATGTGAACCTTTGTCCAGACCAATcagggttcataatttcagaggaacaaca
tggttcaaattggatgcccacccaatcacacagcttccacttcattgtgaactttggatccatg
ataagaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGGTTCATAATTTCAGAGGAACAACATGGTTCAAATTGGATGCCCACCCAATCACACAGCTT
CCACTTCATTGTGAACTTTGGATCCATGATAAGAGAACAGCTTGGTCGCATTCTTGTATGTCAC
TTCAGCAAGTTCTATTTCTGATATTTCAAGCAGTGAGGCGACATACTTCATAACCTGAGACAAA
GAACCACAGTTTATTAAGCTTTTGTCAGTCCATGATTTACTCTGCTGTATGTATAAGAATGTTA
ACTCAAGAGGACCTTTTCGGACAGATGGAACATGCAAGGAGTGGTGAGCTGGCAGTGGACCAAT
ATAAGTGGCTTAAAACAAAACAGCAGCAGTACAGTAATATGCAACTGTGTTTTTCAGATACTAG
CATCCAAAACAGATTGCACGGAGGAATTGTGAAGTGTGAACAGTGTACAGTGTTGTTGAAATTG
TTCGCAAGCATAGAAAACATTGTATGAGTTGATGGTATGATAAACCTCTTTAGTCCTGTGGAGG
ACTTATAAAGCATAGCAGCCAAGACAAAAAAAGATAAAACAGTGGAGCTATCAAGGAACTTATG
TAAAAGAAGTGGTCCAGCAGAAAGGCTTGTAATAACTACCATGAAGATTCTTTAACGAAAAAAA
GTCAGCAAAGGGCACCCTAGCAAAAATCTTACAATGTGGATATTAGATGGATGGTTCAAAGACT
CATTTGAAGTGGTAGATGCCCGTGAATTAGAATCTTTTTTACTTTCTCCATTATCTGCACTTGA
GCTATCCACAGGTACTGCTAATAGAGAAATATCATCCAATTTCGGTAATGCATCCGGTGCGTCG
GTCTCTAGCAGAATTCTGTCTAAGGGCATCTAAAATAAGTACAAATGTAGACAATTAGTAAATC
CCTCTGAGATGGCATCTAAAAGTACAGAATAAAATTACTTACTGATTTTAGCATTTTCTTTGCC
TTCGTGGATTTCATGCCTGTAAGGAAGCCGGACAACGAAAAGTAACAGCCTAAAATTTCAAGGC
TGGACACCATTTCTGCAGATCCTAGATACGAATGCAGCAACACACCAGCTGGGAAAGGTCCAGT
TCTCCTGCAAGCAACAAAAATGTAGGAATCAATACTTATTGGAGAAAAACAATCAGAAGTTACA
TGCTATTTGTGCTAGCAGTTAGGTAATCTGGACCGTATACTTCAGATTGGCATTTGTTGTCTAA
GACAGGCAGGATTCTCAAGGTTTTGGTTATCTAGTCAATAAATGTATCCGAACTATGTTAGGAA
CTGGTGGATACCATACTATAAATAATCTACTAAGAATTTCAACTTAAACATACTTTGAGAACAA
ATCTCCATGTCTTACTTTAGTATCTCCAGAAGATCACCAAAGGCGCGCACACAATGAACAGAAA
CAGGCTTGTTCAACTCCTTAGCAAGTTCAAGTTGCTGCTGGAAAACTTCAACCTGCAGTGATAT
TTTTTAGCTTCTGATAGTCTTATTGGTGGCATAAAGCTTGCTCATGATGCAAAAGGACTTGAGG
CATAGGTTATATGGCCTAGTGATTTACACATGTTGGAACATTTGGAAGGAGCAGAGTAGGTGAG
CTTTTCAAGATCAGTGTCTTCAGCCACAACAAATCATTTACAAGATCGAAGAGGATATTGAGCA
ACAGGAGAGAGATTTTCTAGCTTAGCTTGCATGAGTTTTATCGCTTTTGTGTTACTCCCTTCTT
CCTTGCTCCTTTTAAACTTCTATCCTCCTTTAATGTAATAGGCAAAGCTCTTGGCCTTTCTTTT
AAGAAAAAAATAGTCTTATGGGCATAAATGGGCGCCCAACTAAAACAGGGGCATTAATAGATAA
AATCGTTATATCCATCAGATAACTGAATGTCTTGATAGATCATATAAAACAAGAAGTGAAGAAG
GAAAAATGCTAATTACAAACCTGTTCTCCAAAGTCAATGGTTTTTCCATGTGAACCTTTGTCCA
GACCAAT
Conservation Information
Conserved circRNAs osi_circ_014697
PMCS 0.319703562
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017