Detail information of BGIOSGA014513_circ_igg.1


General Information
CircRNA Name BGIOSGA014513_circ_igg.1
ID in PlantcircBase osi_circ_014697
Alias Chr04:29746749_29748740(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27907990-27909981  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATCATATAAGACAAGAAGTGAAGAAGGAAAAATGCTAATTACAAACCTGTTCTCCAAAGTC
AATGGTTTTTCCATGTGAACCTTTGTCCAGACCAATccagggttcataatttcagaggaacaac
atggttcaaattggatgcccacccaatcacacagcttccacttcattgtgaactttggatccat
gataagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGGTTCATAATTTCAGAGGAACAACATGGTTCAAATTGGATGCCCACCCAATCACACAGCT
TCCACTTCATTGTGAACTTTGGATCCATGATAAGAGAACAGCTTGGTCGCATTCTTGTATGTCA
CTTCAGCAAGTTCTATTTCTGATATTTCAAGCAGTGAGGCGACATACTTCATAACCTGAGACAA
AGAACCACAGTTTATTAAGCTTTTGTCAGTCCATGATTTACTCTGCTGTATGTATAAGAATGTT
AACTCAAGAGGACCTTTTCGGACAGATGGAACATGCAAGGAGTGGTGAGCTGGCAGTGGACCAA
TATAAGTGGCTTAAAACAAAACAGCAGCAGTACAGTAATATGCAACTGTGTTTTTCAGATACTA
GCATCCAAAACAGATTGCACGGAGGAATTGTGAAGTGTGAACAGTGTACAGTGTTGTTGAAATT
GTTCGCAAGCATAGAAAACATTGTATGAGTTGATGGTATGATAAACCTCTTTAGTCCTGTGGAG
GACTTATAAAGCATAGCAGCCAAGACAAAAAAAGATAAAACAGTGGAGCTATCAAGGAACTTAT
GTAAAAGAAGTGGTCCAGCAGAAAGGCTTGTAATAACTACCATGAAGATTCTTTAACGAAAAAA
AGTCAGCAAAGGGCACCCTAGCAAAAATCTTACAATGTGGATATTAGATGGATGGTTCAAAGAC
TCATTTGAAGTGGTAGATGCCCGTGAATTAGAATCTTTTTTACTTTCTCCATTATCTGCACTTG
AGCTATCCACAGGTACTGCTAATAGAGAAATATCATCCAATTTCGGTAATGCATCCGGTGCGTC
GGTCTCTAGCAGAATTCTGTCTAAGGGCATCTAAAATAAGTACAAATGTAGACAATTAGTAAAT
CCCTCTGAGATGGCATCTAAAAGTACAGAATAAAATTACTTACTGATTTTAGCATTTTCTTTGC
CTTCGTGGATTTCATGCCTGTAAGGAAGCCGGACAACGAAAAGTAACAGCCTAAAATTTCAAGG
CTGGACACCATTTCTGCAGATCCTAGATACGAATGCAGCAACACACCAGCTGGGAAAGGTCCAG
TTCGCCTGCAAGCAACAAAAATGTAGGAATCAATACTTATTGGAGAAAAACAATCAGAAGTTAC
ATGCTATCTGTGCTAGCAGTTAGGTAATCTGGACCGTATACTTCAGATTGGCATTTGTTGTCTA
AGACAGGCAGGATTCTCAAGGTTTTGGTTATCTAGTCAATAAATGTATCCGAACTATGTTAGGA
ACTGGTGGATACCATACTATAAATAATCTACTAAGAATTTCAACTTAAACATACTTTGAGAACA
AATCTCCATGTCTTACTTTAGTATCTCCAGAAGATCACCAAAGGCGCGCACACAATGAACAGAA
ACAGGCTTGTTCAACTCCTTAGCAAGTTCAAGTTGCTGCTGGAAAACTTCAACCTGCAGTGATA
TTTTTTAGCTTCTGATAGTCTTATTGGTGGCATAAAGCTTGCTCATGATGCAAAAGGACTTGAG
GCGTAGGTTATATGGCCTAGTGATTTACACATGTTGGAACATTTGGAAGGAGCAGAGCAGGTGA
GCTTTTCAAGATCAGTGTCTTCAGCCATAACAAATCATTTACAAGATCGAAGAGGATATTGAGC
AACAGGAGAGAGATTTTCTAGCTTAGCTTGCATGAGTTTTATCGCTTTTGTGTTACTCCCTTCT
TCCTTGCTCCTTTTAAACTTCTATCCTCCTTTAATGTAATAGGCAAAGCTCTTGGCCTTTCTTT
TAAGAAAAAAATAGTCTTATGGGCATAAATGGGCGCCCAACTAAAACAGGGGCATTAATAGATA
AAATCGTTATATCCATCAGATAACTGAATGTCTTGATAGATCATATAAGACAAGAAGTGAAGAA
GGAAAAATGCTAATTACAAACCTGTTCTCCAAAGTCAATGGTTTTTCCATGTGAACCTTTGTCC
AGACCAAT
Conservation Information
Conserved circRNAs osa_circ_024975
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021