Detail information of BGIOSGA036418_circ_g.5


General Information
CircRNA Name BGIOSGA036418_circ_g.5
ID in PlantcircBase osi_circ_010281
Alias Chr12:6551021_6559397(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr12: 6841442-6848177  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA036418
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036418_circ_g.1 BGIOSGA036418_circ_g.2 BGIOSGA036418_circ_g.3 BGIOSGA036418_circ_g.4 BGIOSGA036418_circ_g.6 BGIOSGA036418_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   AG-TA
Number of exons covered BGIOSGA036418-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGGATCTTCACTCAATGAGAGCTCGATCATGTTAAGTTTAAATGTAGCGTCGACGTCGTCTT
TCTGAGATTTATTTTTCTTTGCATATAACAGTTTGCcctgtggttgaaactcttgaactgcctc
cacttgttcgggatgatttgtacaaacaatgcttgcttcgtggtattgctgcagtttgttccca
ttcagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021