Detail information of BGIOSGA036418_circ_g.4


General Information
CircRNA Name BGIOSGA036418_circ_g.4
ID in PlantcircBase osi_circ_010280
Alias Chr12:6551021_6555490(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr12: 6841442-6845916  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA036418
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036418_circ_g.1 BGIOSGA036418_circ_g.2 BGIOSGA036418_circ_g.3 BGIOSGA036418_circ_g.5 BGIOSGA036418_circ_g.6 BGIOSGA036418_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA036418-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATGAATGTAAGCCCGCTGGAAGAAATATTACTCACCAGGTACTTGTGTGAACGTTTATAGT
CATCTTCATCTTCAGAGTATTTCCCATTATCAGCATcctgtggttgaaactcttgaactgcctc
cacttgttcgggatgatttgtacaaacaatgcttgcttcgtggtattgctgcagtttgttccca
ttcagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGGTTGAAACTCTTGAACTGCCTCCACTTGTTCGGGATGATTTGTACAAACAATGCTTGC
TTCGTGGTATTGCTGCAGTTTGTTCCCATTCAGCAAGTGTGAGAAAACATGTATATCAAACACA
ATACACTTCATTTTGCAAGAGTATTTTACGGAGCTCTCTATAGTATTATCATCAATAGAATTGT
TCATTAATGAGTTTTATTACCAATAGAAAATTATTACACTATCAATAGTTGATGCGGTACTATA
AATAGATACATAAAAATAAATGGTTTACATTGGTTGTACTACCAGTATTGTAATACCACCGTAA
AGAAATGTTGTAATGAGGAACGCACTCACAAGATCCTTTTTTGAAGCTTCATGTTTCATTAGTG
AAGAACAAGATGTTTCAATCTTTGATCTAACTTTATTTCACTATTTTAATAAATGGAAACATTT
TTATCTTAGTGCTTAAATATTTCTCTATTAGATATGAAACAGCGCCTGATTTTTTTTTAATGAT
CGGGTGCCCGATTTGATGTCGCTTTGTCATCTCTATCATCATCATCAAACAAGTTTTTTGCTTA
TGTTGTCAGGTACAATTAGGTTGGGTTTGGTAGATGGTGTTGGGAGCTAATCCTTTGTGCACGC
AAAACAGAATGACTCATTAGCGCATGATTAATTAAGTATTAGCTTTTTGCTTAAAAAAGTGTAC
CGTTTAGTAGTTCGGGAAACGTGCATGTGAAAAATGAGGGAGGTTAATTGGAAAAGTGTACCAC
ATGCACCACTATTCCCAGGTACTTAGCATGCAAATGCATATACATACCTGTATATATACTACCC
TAGTTTTCAGTTTGAATGCTACTATGTACTACTACTACTATATATGTTAATTACTCCAGCAAAT
ATGTTATATAATATTGGCAACAAGACGTGTTGAAATATCTCCAAAAATTGAATATAGACAAATA
TATGCATTTAATTGTTTACATAACTCTGAGTAATACTCCCTCCGTTTCACAATGTAAGTCATTC
TAGCATTTTCTAAATTCATGTTGATATTAATGAATCTAGACATATATATCTATCTAGATTCATT
AACATCAATATGAATGTGAGAAATGGTAGAATGACTTACATTGTGAAACGGAAGGAGTACCATA
TTATATATTCCAGTTAATCATTTGGCAATATCGTCTTGCCCATTCGACCATAGTACTTAACTAG
TATCCCAGCTTTTACGTACAACACTGTTTTTGGAGAATGGAGTATGTCTACGATCGTATCGTAC
GTGCAATGAACCCAGATTGAATTAGTAGGTACTTGTTCTGAATGCATTTGTTTCCTGAAACATA
CGTGCAATGCATGAGTTTCTAGTTAACCTAATCCAGTGCAGACTGAAACTATATATATACTCCT
ATTTGATAATAAGATGATGTAAACTCTAGCACAGTTGGCACATGCGTTCAGTGTGAACACACTG
TAGCCAGGGTTCCATTATTGAACCCCTCTGGATTAAATAAAGCGTTAGAAATACGTGGTTACTC
CTATCTTAATCCCTCGTATGCTAGCTCTTTCTAGCTATCCTAGCTTTAAAGATGGTGTAAGAAT
GCTTTTATGAAAAAATACCCTTTTTTTTTTTGCAAAGATCACAGGCCCGTAATATCCGGGCATG
ATATACATATATATCTACACGGTTTTGGATATCTAGGCATTGACAATTCAATTGATCCAAGTAT
ATATTTCTCTGTAATTTACCTTTTTACCATGTATGCCTCAACACGGAAAAAAAAAACAAGGTGG
AGAAACAAATGGTAAGCACATCCGGAACATACCTGACTTTGACCGCGAATGGTTATTACTTCGC
CAGTTTGAAGAGCTTCCGGCCGAAAATCAGAAAGGTTTACTGGAAACTGTTGTTGGTTGCGGGC
ATAGAAATCATATTGCTTCATGTCAACCGGGACAGCAGACTGTAAACAAATTAAGGTTGTGTTT
AGATCCAAGGGTGTAAAGTTTGACGTATCACATCGGATATACGGACACACATTTGAAGTATTAA
ATGTAGTCTAATAACAAAACAAATTACAGAATCCGCCTGTAAATCGCGAGACGAATTTATTAAG
CCTAATTAATCCGTCATTAGCAAATGTTTAATGTAGCACCACATTGTCAAATCATGACACAATT
AGGCTTAAAAGATTCGTTTCACAATTTACACGCAATCTGTGTAATTAGTTATTTTTTTTCGTTT
ATATTTAATACTCCATGCATACGTGCAAACATTCGATGTGACAGGGTGTAAAATTTTGCCAAGG
ATCTAAACAAGCCCTAAGAATAACTACTAAAAACAGAAGACATCTTTTCTTTTTCTTATGCTTG
ATATGGCACTTCTCCCAGCTGCACATATAGATAAGATTTAAGCTACCTTTTATTGCCAAAGATT
CACTTTAAAACACACTTTGCTCTGTTTTTTTTTCATTTCTGCACCTTATTTCACACTTCCTTAG
TCAAAATATAGCTATCACTCTATATATTGTGCAAGTTTAATGGTTTAGGTGACTGGTGAGAGAA
ACAAATCAGGCAACTATTTTTTCGTTTCCTTTATGTAAGATTCTGTCTCTGTTTTGGCTCTCCC
AAAGCTGGGTAATGCATTTACCTGTTTTCAAAAAAAAAATCAGGCAACTAATTAATAGTAAAGG
CGCAAAACATAATGGAAAATGTTGAAAGAAAGTCTGTGTGCATGACACATACACACCTGACTCT
GTTGAGTAATTACTGCTTCATTTTGTGAAACTTGTGAAGTATTCAAAATTTGATGTTTAGTGGT
TGTAAAAATATCTGCATTGTGAAGATTGTAAGCATTACATGCAATAATAAATATTAATTTGCAA
ATAGTTAATTGACTATTATGTAAAAAAAACAGGGTTGACCCTTTTAAGCTTTATCGTAACACAA
GGAGAACAATAAATATCCTTGAAACACACCAAATGCATCATCAATCTAGTAATCTCTGTAGAAT
TATTCGGTCTATCTCTGGCCTAATGCATCTTAAACTTTATTCTTACCGAGATTTGAGAAGTCTT
TAATCTGAGAACTTCCAATAGCAGGCTCCTGACGTAAACATGCCCTCTTATTCTCTTCAAACAC
CTGGGAGCCCTTGAGGGTACCTTTTCTTTTCACAAGCATTCTATGTACTACTGATAGCATATCA
TTCATCTTTTCCAGTATAAAATCGTCAAGGTCCTGGAAGGGTGCATGATTAACAAGTGTTTATT
GTTAGAATGAACTAGAATTAAATAGATGTGACTTAATAAAAGGAGGGAGACAAAAATTTTCATA
GGTTAATTATTCAATGGCTAGAAATAATTGAAGGATAAAACATCTTAAGAAAGAGAGAAATATC
ATTAGCTACAGTAAATAGAGGAAGTATATAATGAGAATAAAGTAATGGTCAGGAGAGAGGGAGG
GTGGCGCTCAAGGTTGAGGAAGAAAATATATAGTGTGTGACACTGCCATTTGGGCCCCCATTAC
CTTTTTAAACTTTTTACTTACTGGACTACCTTGTAATGAAAGTTTTTGTTTGAGGGCAATAAAG
TGGATGGTTTTCGAAGTTAAAAGGGTGAATATGTTCGGTTTAGAAATTTAGAGCTGTTTTTTTT
TACTTCCATTATAGTTTAGGGGTATATGTCAAATGGATTTTTCAATAAAGTTTGTTAATTTTTT
CTGTCTATATTCTCACCAAATAGAAAGAGTCTGGCATTTGTACGGAAATCCTTCCATTTATTCT
CCCATTTCAGAATATGAAATGTTTTGATTTAATCCTAACTCAAACTTCTCTAAGTTTGACCAAG
TGTATAGAAAAATATAATAATATCTACAACACCAAATCAATTTCATTAAATCCACCATTGATAT
ATTTCTACGATATATGTTTGTTTGGTGTTAAAATTACTGTTACTTTTAATAAATTTGATCAAAT
TCAAAGAAGTTTGATTTAGAACAAAATCGAAACATCTTACATCTTAAAAAAGAACATCTTACAT
TCTGAAATGGAAGGAGTGCCTCGATTGTGCTTGCTATGTCCTGGTGTTGTTGCAGCCATGTATC
CAAACGACGAACAATAGTGTCACGCAAGGTAATGGCGCTTTGAATGTTGTTATAACTATGTTCA
TCAACAACTTTATATTTGCCCTTCATCTGTATACAGAAGAAGTTATGTAGAACTAGACTGAAAT
TAATTCAATGTGTGTAATATACGGTAGAAATATCACACTCCAAAATATCATGCCAGCTGAGATG
ATATTTGATTTGTAAATATGCTTAACTCCTCTCAAATATAAATGAATCACTGAAAGTTCAAATA
GTTGCACCACCAAAGTTATTTGTAGAATGAATGTAAGCCCGCTGGAAGAAATATTACTCACCAG
GTACTTGTGTGAACGTTTATAGTCATCTTCATCTTCAGAGTATTTCCCATTATCAGCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021