Detail information of Os11g0183700_circ_g.2


General Information
CircRNA Name Os11g0183700_circ_g.2
ID in PlantcircBase osa_circ_008712
Alias NA
Organism Oryza sativa
Position chr11: 4226567-4227424  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0183700
Parent gene annotation Myb, DNA-binding domain containing protein. (Os11t0183700-01);Hy
pothetical conserved gene. (Os11t0183700-02)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0183700-02:3
Os11t0183700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTGTGGTTTGTCGGCAGCAGCTACGAAGGCTAAACTTTTTGCAGATCAAGAGGAACGTGAA
ATCCAAAGACTAACTGCTACTGTAATAAACCATCAGgttgggtttttggcttctgctatgggac
caagagttgcagcatcatgtgcaagtgctgctttatcagttttgacagtagatgatgattccag
gttagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGGTTTTTGGCTTCTGCTATGGGACCAAGAGTTGCAGCATCATGTGCAAGTGCTGCTTTAT
CAGTTTTGACAGTAGATGATGATTCCAGGTTAGCCATCTTCCCTGAAATGTTTTATTTTAGTAG
CATGATTAAATCATTTAACACTTCAGTCAGGATTTTAGAAAAAGGTTACATAAATTGAATACTA
GATCTTATCTGGTACAACTACAAGCTACCAGCAATAACCATCTTTGAGTTCTGTTTGAGTTTAT
TTTATCAAACAGCATATGAGTACTAGATAAATGAATAAGATTAGTCCAGAAATATCGCACCAAT
ACTTGTAGCTACAGTACTACTGATACGGCTACCCAGATAGTAACCAGGTGGTTACTACTGATCT
TTATCCCTCATTGAGATTGCGGAACTTATCCACCTGATGTTAAAATTGGACCTTTGGTTTGTTT
CATTTGGTCGTTAGGTTGGTTTGCAGTCTCCTTTGGACTTATTATGGTAGATGTAGGTTTTGAC
TTACCTTTTGCTGAACACTGAAGGGTGAATTCAGAAGGCATTTGCTCTGATTCTAGGGGCCAAG
GTCCGCATCCGAATTTTCGTGATCATAATGGTGGTAATGACTTCATATTTATTCTCCACTATGA
TAATCAGTTTTCTGCGCAATCTCATGTACTCATGCAAGATATTAGTGTTAAGGAAACCATCCTA
TCCTTAAATAGGTGTATCTTCATCCATCTCTCCAGAAAAGGTGAAGCATGCTGCCATGTGTGGT
TTGTCGGCAGCAGCTACGAAGGCTAAACTTTTTGCAGATCAAGAGGAACGTGAAATCCAAAGAC
TAACTGCTACTGTAATAAACCATCAG
Conservation Information
Conserved circRNAs osi_circ_009319
PMCS 0.121988782
Functional Information
Coding potential Y
Potential coding position 4226589-4227421(+)
4227121-4227423(-)
Potential amino acid sequence MGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAM
CGLSAAATKAKLFADQEEREIQRLTATVINHQVGFLASAMGPRVAASCASAALSVLTVDDDSRV
NSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLT
ATVINHQVGFLASAMGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGV
SSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQVGFLASAMGPRVAASCAS
AALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAK
LFADQEEREIQRLTATVINHQ(+)
MPSEFTLESSSTVKTDKAALAHDAATLGPIAEAKNPT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017