Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0183700_circ_g.2 |
ID in PlantcircBase | osa_circ_008712 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 4226567-4227424 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0183700 |
Parent gene annotation |
Myb, DNA-binding domain containing protein. (Os11t0183700-01);Hy pothetical conserved gene. (Os11t0183700-02) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0183700-02:3 Os11t0183700-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009319 |
PMCS | 0.121988782 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4226589-4227421(+) 4227121-4227423(-) |
Potential amino acid sequence |
MGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAM CGLSAAATKAKLFADQEEREIQRLTATVINHQVGFLASAMGPRVAASCASAALSVLTVDDDSRV NSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLT ATVINHQVGFLASAMGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGV SSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQVGFLASAMGPRVAASCAS AALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAK LFADQEEREIQRLTATVINHQ(+) MPSEFTLESSSTVKTDKAALAHDAATLGPIAEAKNPT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |