Detail information of BGIOSGA034932_circ_g.2


General Information
CircRNA Name BGIOSGA034932_circ_g.2
ID in PlantcircBase osi_circ_009319
Alias Chr11:4331121_4331985(MH63RS2), Chr11:4402313_4403177(ZS97RS2), Chr11:4331121_4331985(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4065737-4066601  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA034932
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA034932-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGTGTGGTTTGTCGGCAGCAGCTACGAAGGCTAAACTTTTTGCGGATCAAGAGGAACGTGAA
ATCCAAAGACTAACTGCTACTGTAATAAACCATCAGggttgggtttttggcttctgctatagga
ccaagagttgcagcatcatgtgcaagtgccgctttatcagatttgacaatagatgatgattcca
ggttagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGGTTTTTGGCTTCTGCTATAGGACCAAGAGTTGCAGCATCATGTGCAAGTGCCGCTTTA
TCAGATTTGACAATAGATGATGATTCCAGGTTAGTCATCTGAAATGTTTTTATTTTGAGTAGCA
TGATTAAATCAGTAAACACTTCACTTCAGTCAGGATTTTAGAAAAAGGTTACATAAATTGAATA
CCAAATCTTATCTGGTACAACTACAAGCTACCAGCAATAACCATCTTTGAGTTCTGTTTGACTT
TCTTTTATCAAACAGCGTATGAATGGGTACTAGATAAATGAATAAGATTAGGCCAAAAATATCG
TGCCAATACTTGTAGCTACAGTACTACCAATATGGTTACTCAGATAGCAACCAGGTGGTTACTG
CCGATCTTTATCCCTCATTGAGATTGTGGAACTTATCCACCTGATGTTAGAATTGGACCTTTGG
TTTGTTTCATTTGGTTGTTTGGTTGGTTTGCAGTCTCCTTTGGACTTATTATGGTAGATCTAGG
TTTTGACTTACCTTTTGCTAAACACTGAAGGGTGAATTCAGAAGGCATTTGCTCTGATGCTAGG
GGCCATGGTGCACATCCGAATTTTCGTGATCATAATGGTGGTAATGACTTCATATTTATTCTCC
ACTACGATAATCAGTTTTCTGCGCAATCCCATGTACTCATGCAAGATACTAGTGTTAAGGAAAC
CATCCTATCCTTAAATAGGTGTATCTTCATCCATCTCTCCAGAAAAGGTGAAGCATGCTGCCAT
GTGTGGTTTGTCGGCAGCAGCTACGAAGGCTAAACTTTTTGCGGATCAAGAGGAACGTGAAATC
CAAAGACTAACTGCTACTGTAATAAACCATCAG
Conservation Information
Conserved circRNAs osa_circ_008712
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021