Plant Circular RNA Database

Detail information of Niben101Scf02068g01001_circ_g.22

			
						 General Information
					
						CircRNA Name
						Niben101Scf02068g01001_circ_g.22
					
						ID in PlantcircBase
						nbe_circ_000800
					
						Alias
						NA
					
						Organism
						
							Nicotiana benthamiana						
					
						Position
						
							chrNiben101Scf02068: 134100-134138  JBrowse»						
					
						Reference genome
						
							Niben.genome.v1.0.1						
					
						Type  
						
							i-circRNA							
									
						Identification method
						DCC
					
						Parent gene
						
							Niben101Scf02068g01001						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							Niben101Scf02068g01001_circ_g.38 Niben101Scf02068g01001_circ_g.39 Niben101Scf02068g01001_circ_g.40 Niben101Scf02068g01001_circ_g.41 Niben101Scf02068g01001_circ_g.42 Niben101Scf02068g01001_circ_g.43 Niben101Scf02068g01001_circ_g.44 Niben101Scf02068g01001_circ_g.45 Niben101Scf02068g01001_circ_g.46 Niben101Scf02068g01001_circ_g.47 Niben101Scf02068g01001_circ_g.48 Niben101Scf02068g01001_circ_g.49 Niben101Scf02068g01001_circ_g.50 Niben101Scf02068g01001_circ_g.51 Niben101Scf02068g01001_circ_g.52 Niben101Scf02068g01001_circ_g.53 Niben101Scf02068g01001_circ_g.54 Niben101Scf02068g01001_circ_g.55 Niben101Scf02068g01001_circ_g.56 Niben101Scf02068g01001_circ_g.57 Niben101Scf02068g01001_circ_g.58 Niben101Scf02068g01001_circ_g.59 Niben101Scf02068g01001_circ_g.60 Niben101Scf02068g01001_circ_g.61 Niben101Scf02068g01001_circ_g.62 Niben101Scf02068g01001_circ_g.63 Niben101Scf02068g01001_circ_g.64 Niben101Scf02068g01001_circ_g.65 Niben101Scf02068g01001_circ_g.66 Niben101Scf02068g01001_circ_g.67 Niben101Scf02068g01001_circ_g.68 Niben101Scf02068g01001_circ_g.69 Niben101Scf02068g01001_circ_g.70 Niben101Scf02068g01001_circ_g.71 Niben101Scf02068g01001_circ_g.72 Niben101Scf02068g01001_circ_g.73 Niben101Scf02068g01001_circ_g.74 Niben101Scf02068g01001_circ_g.75 Niben101Scf02068g01001_circ_g.76 Niben101Scf02068g01001_circ_g.77 Niben101Scf02068g01001_circ_g.78 Niben101Scf02068g01001_circ_g.79 Niben101Scf02068g01001_circ_g.80 Niben101Scf02068g01001_circ_g.81 Niben101Scf02068g01001_circ_g.82 Niben101Scf02068g01001_circ_g.83 Niben101Scf02068g01001_circ_g.84 Niben101Scf02068g01001_circ_g.85 Niben101Scf02068g01001_circ_g.86 Niben101Scf02068g01001_circ_g.87 Niben101Scf02068g01001_circ_g.88 Niben101Scf02068g01001_circ_g.89 Niben101Scf02068g01001_circ_g.90 Niben101Scf02068g01001_circ_g.91 Niben101Scf02068g01001_circ_g.92 Niben101Scf02068g01001_circ_g.93 Niben101Scf02068g01001_circ_g.94 Niben101Scf02068g01001_circ_g.95 Niben101Scf02068g01001_circ_g.96 Niben101Scf02068g01001_circ_g.97 Niben101Scf02068g01001_circ_g.98 Niben101Scf02068g01001_circ_g.99 Niben101Scf02068g01001_circ_g.100 Niben101Scf02068g01001_circ_g.101 Niben101Scf02068g01001_circ_g.102 Niben101Scf02068g01001_circ_g.103 Niben101Scf02068g01001_circ_g.104 Niben101Scf02068g01001_circ_g.105 Niben101Scf02068g01001_circ_g.106 Niben101Scf02068g01001_circ_g.20 Niben101Scf02068g01001_circ_g.107 Niben101Scf02068g01001_circ_g.21 Niben101Scf02068g01001_circ_g.108 Niben101Scf02068g01001_circ_g.109 Niben101Scf02068g01001_circ_g.110 Niben101Scf02068g01001_circ_g.111 Niben101Scf02068g01001_circ_g.112 Niben101Scf02068g01001_circ_g.113 Niben101Scf02068g01001_circ_g.114 Niben101Scf02068g01001_circ_g.115 Niben101Scf02068g01001_circ_g.116 Niben101Scf02068g01001_circ_g.117 Niben101Scf02068g01001_circ_g.118 Niben101Scf02068g01001_circ_g.119 Niben101Scf02068g01001_circ_g.120 Niben101Scf02068g01001_circ_g.121 Niben101Scf02068g01001_circ_g.122 Niben101Scf02068g01001_circ_g.123 Niben101Scf02068g01001_circ_g.124 Niben101Scf02068g01001_circ_g.125 Niben101Scf02068g01001_circ_g.126 Niben101Scf02068g01001_circ_g.127 Niben101Scf02068g01001_circ_g.128 Niben101Scf02068g01001_circ_g.129 Niben101Scf02068g01001_circ_g.130 Niben101Scf02068g01001_circ_g.131 Niben101Scf02068g01001_circ_g.132 Niben101Scf02068g01001_circ_g.133 Niben101Scf02068g01001_circ_g.134 Niben101Scf02068g01001_circ_g.135 Niben101Scf02068g01001_circ_g.136 Niben101Scf02068g01001_circ_g.137 Niben101Scf02068g01001_circ_g.138 Niben101Scf02068g01001_circ_g.139 Niben101Scf02068g01001_circ_g.140 Niben101Scf02068g01001_circ_g.141 Niben101Scf02068g01001_circ_g.142 Niben101Scf02068g01001_circ_g.143 Niben101Scf02068g01001_circ_g.144 Niben101Scf02068g01001_circ_g.145 Niben101Scf02068g01001_circ_g.146 Niben101Scf02068g01001_circ_g.147 Niben101Scf02068g01001_circ_g.148 Niben101Scf02068g01001_circ_g.149 Niben101Scf02068g01001_circ_g.150 Niben101Scf02068g01001_circ_g.151 Niben101Scf02068g01001_circ_g.152 Niben101Scf02068g01001_circ_g.153 Niben101Scf02068g01001_circ_g.154 Niben101Scf02068g01001_circ_g.155 Niben101Scf02068g01001_circ_g.156 Niben101Scf02068g01001_circ_g.157 Niben101Scf02068g01001_circ_g.158 Niben101Scf02068g01001_circ_g.159 Niben101Scf02068g01001_circ_g.160 Niben101Scf02068g01001_circ_g.161 Niben101Scf02068g01001_circ_g.162 Niben101Scf02068g01001_circ_g.163 Niben101Scf02068g01001_circ_g.164 Niben101Scf02068g01001_circ_g.165 Niben101Scf02068g01001_circ_g.166 Niben101Scf02068g01001_circ_g.167 Niben101Scf02068g01001_circ_g.168 Niben101Scf02068g01001_circ_g.169 Niben101Scf02068g01001_circ_g.170 Niben101Scf02068g01001_circ_g.171 Niben101Scf02068g01001_circ_g.172 Niben101Scf02068g01001_circ_g.173 Niben101Scf02068g01001_circ_g.174 Niben101Scf02068g01001_circ_g.175 Niben101Scf02068g01001_circ_g.176 Niben101Scf02068g01001_circ_g.177 Niben101Scf02068g01001_circ_g.178 Niben101Scf02068g01001_circ_g.179 Niben101Scf02068g01001_circ_g.180 Niben101Scf02068g01001_circ_g.181 Niben101Scf02068g01001_circ_g.182 Niben101Scf02068g01001_circ_g.183 Niben101Scf02068g01001_circ_g.184 Niben101Scf02068g01001_circ_g.185 Niben101Scf02068g01001_circ_g.1 Niben101Scf02068g01001_circ_g.2 Niben101Scf02068g01001_circ_g.3 Niben101Scf02068g01001_circ_g.4 Niben101Scf02068g01001_circ_g.5 Niben101Scf02068g01001_circ_g.6 Niben101Scf02068g01001_circ_g.7 Niben101Scf02068g01001_circ_g.8 Niben101Scf02068g01001_circ_g.9 Niben101Scf02068g01001_circ_g.10 Niben101Scf02068g01001_circ_g.11 Niben101Scf02068g01001_circ_g.12 Niben101Scf02068g01001_circ_g.13 Niben101Scf02068g01001_circ_g.14 Niben101Scf02068g01001_circ_g.15 Niben101Scf02068g01001_circ_g.16 Niben101Scf02068g01001_circ_g.17 Niben101Scf02068g01001_circ_g.18 Niben101Scf02068g01001_circ_g.19 Niben101Scf02068g01001_circ_g.23 Niben101Scf02068g01001_circ_g.24 Niben101Scf02068g01001_circ_g.25 Niben101Scf02068g01001_circ_g.26 Niben101Scf02068g01001_circ_g.27 Niben101Scf02068g01001_circ_g.28 Niben101Scf02068g01001_circ_g.29 Niben101Scf02068g01001_circ_g.30 Niben101Scf02068g01001_circ_g.31 Niben101Scf02068g01001_circ_g.32 Niben101Scf02068g01001_circ_g.33 Niben101Scf02068g01001_circ_g.34 Niben101Scf02068g01001_circ_g.35 Niben101Scf02068g01001_circ_g.36 Niben101Scf02068g01001_circ_g.37 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-GG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						0

General Information
CircRNA Name	Niben101Scf02068g01001_circ_g.22
ID in PlantcircBase	nbe_circ_000800
Alias	NA
Organism	Nicotiana benthamiana
Position	chrNiben101Scf02068: 134100-134138 JBrowse»
Reference genome	Niben.genome.v1.0.1
Type	i-circRNA
Identification method	DCC
Parent gene	Niben101Scf02068g01001
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	Niben101Scf02068g01001_circ_g.38 Niben101Scf02068g01001_circ_g.39 Niben101Scf02068g01001_circ_g.40 Niben101Scf02068g01001_circ_g.41 Niben101Scf02068g01001_circ_g.42 Niben101Scf02068g01001_circ_g.43 Niben101Scf02068g01001_circ_g.44 Niben101Scf02068g01001_circ_g.45 Niben101Scf02068g01001_circ_g.46 Niben101Scf02068g01001_circ_g.47 Niben101Scf02068g01001_circ_g.48 Niben101Scf02068g01001_circ_g.49 Niben101Scf02068g01001_circ_g.50 Niben101Scf02068g01001_circ_g.51 Niben101Scf02068g01001_circ_g.52 Niben101Scf02068g01001_circ_g.53 Niben101Scf02068g01001_circ_g.54 Niben101Scf02068g01001_circ_g.55 Niben101Scf02068g01001_circ_g.56 Niben101Scf02068g01001_circ_g.57 Niben101Scf02068g01001_circ_g.58 Niben101Scf02068g01001_circ_g.59 Niben101Scf02068g01001_circ_g.60 Niben101Scf02068g01001_circ_g.61 Niben101Scf02068g01001_circ_g.62 Niben101Scf02068g01001_circ_g.63 Niben101Scf02068g01001_circ_g.64 Niben101Scf02068g01001_circ_g.65 Niben101Scf02068g01001_circ_g.66 Niben101Scf02068g01001_circ_g.67 Niben101Scf02068g01001_circ_g.68 Niben101Scf02068g01001_circ_g.69 Niben101Scf02068g01001_circ_g.70 Niben101Scf02068g01001_circ_g.71 Niben101Scf02068g01001_circ_g.72 Niben101Scf02068g01001_circ_g.73 Niben101Scf02068g01001_circ_g.74 Niben101Scf02068g01001_circ_g.75 Niben101Scf02068g01001_circ_g.76 Niben101Scf02068g01001_circ_g.77 Niben101Scf02068g01001_circ_g.78 Niben101Scf02068g01001_circ_g.79 Niben101Scf02068g01001_circ_g.80 Niben101Scf02068g01001_circ_g.81 Niben101Scf02068g01001_circ_g.82 Niben101Scf02068g01001_circ_g.83 Niben101Scf02068g01001_circ_g.84 Niben101Scf02068g01001_circ_g.85 Niben101Scf02068g01001_circ_g.86 Niben101Scf02068g01001_circ_g.87 Niben101Scf02068g01001_circ_g.88 Niben101Scf02068g01001_circ_g.89 Niben101Scf02068g01001_circ_g.90 Niben101Scf02068g01001_circ_g.91 Niben101Scf02068g01001_circ_g.92 Niben101Scf02068g01001_circ_g.93 Niben101Scf02068g01001_circ_g.94 Niben101Scf02068g01001_circ_g.95 Niben101Scf02068g01001_circ_g.96 Niben101Scf02068g01001_circ_g.97 Niben101Scf02068g01001_circ_g.98 Niben101Scf02068g01001_circ_g.99 Niben101Scf02068g01001_circ_g.100 Niben101Scf02068g01001_circ_g.101 Niben101Scf02068g01001_circ_g.102 Niben101Scf02068g01001_circ_g.103 Niben101Scf02068g01001_circ_g.104 Niben101Scf02068g01001_circ_g.105 Niben101Scf02068g01001_circ_g.106 Niben101Scf02068g01001_circ_g.20 Niben101Scf02068g01001_circ_g.107 Niben101Scf02068g01001_circ_g.21 Niben101Scf02068g01001_circ_g.108 Niben101Scf02068g01001_circ_g.109 Niben101Scf02068g01001_circ_g.110 Niben101Scf02068g01001_circ_g.111 Niben101Scf02068g01001_circ_g.112 Niben101Scf02068g01001_circ_g.113 Niben101Scf02068g01001_circ_g.114 Niben101Scf02068g01001_circ_g.115 Niben101Scf02068g01001_circ_g.116 Niben101Scf02068g01001_circ_g.117 Niben101Scf02068g01001_circ_g.118 Niben101Scf02068g01001_circ_g.119 Niben101Scf02068g01001_circ_g.120 Niben101Scf02068g01001_circ_g.121 Niben101Scf02068g01001_circ_g.122 Niben101Scf02068g01001_circ_g.123 Niben101Scf02068g01001_circ_g.124 Niben101Scf02068g01001_circ_g.125 Niben101Scf02068g01001_circ_g.126 Niben101Scf02068g01001_circ_g.127 Niben101Scf02068g01001_circ_g.128 Niben101Scf02068g01001_circ_g.129 Niben101Scf02068g01001_circ_g.130 Niben101Scf02068g01001_circ_g.131 Niben101Scf02068g01001_circ_g.132 Niben101Scf02068g01001_circ_g.133 Niben101Scf02068g01001_circ_g.134 Niben101Scf02068g01001_circ_g.135 Niben101Scf02068g01001_circ_g.136 Niben101Scf02068g01001_circ_g.137 Niben101Scf02068g01001_circ_g.138 Niben101Scf02068g01001_circ_g.139 Niben101Scf02068g01001_circ_g.140 Niben101Scf02068g01001_circ_g.141 Niben101Scf02068g01001_circ_g.142 Niben101Scf02068g01001_circ_g.143 Niben101Scf02068g01001_circ_g.144 Niben101Scf02068g01001_circ_g.145 Niben101Scf02068g01001_circ_g.146 Niben101Scf02068g01001_circ_g.147 Niben101Scf02068g01001_circ_g.148 Niben101Scf02068g01001_circ_g.149 Niben101Scf02068g01001_circ_g.150 Niben101Scf02068g01001_circ_g.151 Niben101Scf02068g01001_circ_g.152 Niben101Scf02068g01001_circ_g.153 Niben101Scf02068g01001_circ_g.154 Niben101Scf02068g01001_circ_g.155 Niben101Scf02068g01001_circ_g.156 Niben101Scf02068g01001_circ_g.157 Niben101Scf02068g01001_circ_g.158 Niben101Scf02068g01001_circ_g.159 Niben101Scf02068g01001_circ_g.160 Niben101Scf02068g01001_circ_g.161 Niben101Scf02068g01001_circ_g.162 Niben101Scf02068g01001_circ_g.163 Niben101Scf02068g01001_circ_g.164 Niben101Scf02068g01001_circ_g.165 Niben101Scf02068g01001_circ_g.166 Niben101Scf02068g01001_circ_g.167 Niben101Scf02068g01001_circ_g.168 Niben101Scf02068g01001_circ_g.169 Niben101Scf02068g01001_circ_g.170 Niben101Scf02068g01001_circ_g.171 Niben101Scf02068g01001_circ_g.172 Niben101Scf02068g01001_circ_g.173 Niben101Scf02068g01001_circ_g.174 Niben101Scf02068g01001_circ_g.175 Niben101Scf02068g01001_circ_g.176 Niben101Scf02068g01001_circ_g.177 Niben101Scf02068g01001_circ_g.178 Niben101Scf02068g01001_circ_g.179 Niben101Scf02068g01001_circ_g.180 Niben101Scf02068g01001_circ_g.181 Niben101Scf02068g01001_circ_g.182 Niben101Scf02068g01001_circ_g.183 Niben101Scf02068g01001_circ_g.184 Niben101Scf02068g01001_circ_g.185 Niben101Scf02068g01001_circ_g.1 Niben101Scf02068g01001_circ_g.2 Niben101Scf02068g01001_circ_g.3 Niben101Scf02068g01001_circ_g.4 Niben101Scf02068g01001_circ_g.5 Niben101Scf02068g01001_circ_g.6 Niben101Scf02068g01001_circ_g.7 Niben101Scf02068g01001_circ_g.8 Niben101Scf02068g01001_circ_g.9 Niben101Scf02068g01001_circ_g.10 Niben101Scf02068g01001_circ_g.11 Niben101Scf02068g01001_circ_g.12 Niben101Scf02068g01001_circ_g.13 Niben101Scf02068g01001_circ_g.14 Niben101Scf02068g01001_circ_g.15 Niben101Scf02068g01001_circ_g.16 Niben101Scf02068g01001_circ_g.17 Niben101Scf02068g01001_circ_g.18 Niben101Scf02068g01001_circ_g.19 Niben101Scf02068g01001_circ_g.23 Niben101Scf02068g01001_circ_g.24 Niben101Scf02068g01001_circ_g.25 Niben101Scf02068g01001_circ_g.26 Niben101Scf02068g01001_circ_g.27 Niben101Scf02068g01001_circ_g.28 Niben101Scf02068g01001_circ_g.29 Niben101Scf02068g01001_circ_g.30 Niben101Scf02068g01001_circ_g.31 Niben101Scf02068g01001_circ_g.32 Niben101Scf02068g01001_circ_g.33 Niben101Scf02068g01001_circ_g.34 Niben101Scf02068g01001_circ_g.35 Niben101Scf02068g01001_circ_g.36 Niben101Scf02068g01001_circ_g.37
Support reads	NA
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-GG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	0

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TCAACAATAACAAGCCAAGtaaagactcaccaggaaatg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TAAAGACTCACCAGGAAATGTCAACAATAACAAGCCAAG

Sequences
Splice junction sequence	TCAACAATAACAAGCCAAGtaaagactcaccaggaaatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TAAAGACTCACCAGGAAATGTCAACAATAACAAGCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Guria et al., 2019

circRNA

Detail information of Niben101Scf02068g01001_circ_g.22

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