Detail information of BGIOSGA033085_circ_g.5


General Information
CircRNA Name BGIOSGA033085_circ_g.5
ID in PlantcircBase osi_circ_008486
Alias Chr10:19128363_19128523(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15632580-15632740  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA033085
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033085_circ_g.1 BGIOSGA033085_circ_g.2 BGIOSGA033085_circ_g.3 BGIOSGA033085_circ_g.4 BGIOSGA033085_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA033085-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACATTCCATGGTTAGATAAACCATCTGAAAGAGCCAATGTTAGACAGAATACCAGATATGTT
ACTGTGTAGCCACCTAggtgttgctgttctaaaggtgaggttcacaatattatgtttatattga
ggaatatatattgaatgaaataacaaactttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGTTGCTGTTCTAAAGGTGAGGTTCACAATATTATGTTTATATTGAGGAATATATATTGAAT
GAAATAACAAACTTTCCGAACATTCCATGGTTAGATAAACCATCTGAAAGAGCCAATGTTAGAC
AGAATACCAGATATGTTACTGTGTAGCCACCTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021