Detail information of BGIOSGA033085_circ_g.1


General Information
CircRNA Name BGIOSGA033085_circ_g.1
ID in PlantcircBase osi_circ_008482
Alias Chr10:19125555_19128380(ZS97RS2), Chr10:18706740_18709565(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15629771-15632597  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033085
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033085_circ_g.2 BGIOSGA033085_circ_g.3 BGIOSGA033085_circ_g.4 BGIOSGA033085_circ_g.5 BGIOSGA033085_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033085-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGATTAGATCTGCAATTGAGCTAAGCACTTCTGATTACGACAAGGAAAAGCTACAGGAGCGG
TTGGCAAAGCTCTCTGGAGGTGTTGCTGTTCTAAAGggttggaagcaggcttgccttgagcagg
aactatgctgccaaggatatcaagtttggagttgaggcccgtgctttgatgctgaggggtgttg
aggagttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAG
GCCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGGCAGATGCAGTCAAAGTGACAATGGGTC
CTAAGGTATAATTGTGTTCATGTAAATGTGTCATTGTGCACTTGTGTACTTGTCTGAATACGTT
AATTGTTTTGTAGCTATTATAAATGAAGTTCCTTTGATAGAAAGCCAAATGATTGGTTTATGAT
TCTGAAAATAACTGTCATAAACATGGTGCACCTTTTCTCTGATGACAAAATTAGTCTTTATGTC
ATGCTTTCATTGTTGCAGCACAGTGTTTGTTGGGCCTACAACTTTTTATGTTTTTATTTTGTCA
GAGTGCTGTGTTGTGTTATTTGCAGATTGGACTTAACGTGTCTATTATGCAGGGACGCAATGTG
GTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTGACTGTTGCCAAGAGCA
TTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGTTGCTAATGCGAC
CAATGATACTGCTGGAGATGGTATGGCTGTACTTGTACCATTCTGTTGAGAATACTTGGTCCTT
CTGTTAGCATTCAACAACTTTGGTTATATTATAAACAATTCCAGACCATCTCATGTTTTGCCTT
CCTGTAATATTTAACCTGTAACTTATATTTACAAATATGTTCATTATTTGCATTTTTGCATAAA
GTAATTCACTGTATTTAATTTATTGTTGGACGAAGGTTTGAGTGTATGCAGTTCTTATCTTCAT
TGTATTCATAGGTGTGAGTTTTGGCATTGTAATTTATTGTTGTTTGGGCATTTTCAATCATCTA
TCAATGCTACCTTGAATTATAATGCTATATAGTACCACTGGTTTTTGATAGATGTCACGGTTGA
CTTTTTTATACACAATTTGTTTTGTTAAAAAACGAAAATTATTATTCATTTTGTTTGTGACTTG
GTTTATCATCAAAGGTAGTATAAGCATGACTTACATTTTCACATATTTGCACAAATTCAATATG
TGGATTGCATTGTACTTTAGGATTTGCTTAGTTGCATAATTTGTTTGTTCTAACTGTGTTATTC
TGATCCAAAATTCAGGTACCACTTGTGCTACTGTATTGACTAAAGCAATATTTACTGAGGGGTG
CAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGTGGAATTTCAATGGCTGTTGAT
GCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGG
TAATACTTGTGATTCATTGCAGATCTCATTATGTGTTTGACTTGTTTCTTAATCTTAATCTGTT
ACTAAGTTCTTATGTTCATATATAAAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTG
GTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGGTAAG
TTGATCCAAGTTAAAACTGAACTTGGCCTCTCTTATCTCTATTTGGTTGGTAGACTTACTTTAG
TTAAAACTGAACTTGTGCCAACACTCTGGTTTTTCGTTAATTTGTTTGCTTAAACATTTGGTAG
GATGGTAACACCCTTTACAATGAGCTTGAAGTTGTGGAAGGCATGAAACTTGACAGAGGCTACA
TCTCTCCTTACTTTGTTACCAACCCAAAGACCCAGAAATGTGTAAGTTTTTAACTTCTGTTGTT
GGTTGATATGTTCAGTTTTTCTTTTGGAACTATCTCAGTCATGAGGTTATATTTAACAGGAACT
GGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTC
TTGGAGTTGGCTCTGAAGGTATGTGTTTGCTTTCATAAAATAGTTGTATATTGTGGTGGTGCTA
CTGATTTTCTTGCTATAACTGGTCAACATCTTGCCTTGCACAGAAGCAAAGGCCTCTGCTGATT
GTTGCTGAAGATGTAGAGAGCGAGGCATTGGGTACTCTGATTATTAACAAGCTTCGTGCAGGCA
TCAAGGTCAGTAAATACTGGGCATTTGTGATTTGAATCTGTGTAGTTGTCCTAAATGAGGGATG
TGTTGTTCAGGTCTGTGCTGTTAAAGCTCCTGGGTTTGGGGAGAACAGGAAAGCAAACTTACAG
GACCTTGCGATCCTTACTGGAGGAGAAGTAAGTTTAACAATCACCTCTCCAAGTTGGTGCATAT
AAAATTAACCAATTGAATGCATTATAACCTGTTTATTTTAATGATTCAGGTCATAACTGAAGAG
CTAGGAATGAATCTTGAGAAGTTCGAGCCTCAGATGTTGGGTACATGCAAGAAGGTATGAATGA
TTCCTAGAAGGCTGGTAGATAAGCTTTGGCTATCTTTGGAAAGAAATTTGTTTGAAGTGTATCT
TTTGTCCGCTAACATTTAAGATGATACCAGTCTGTTCTGATGGTTGAGTGATATTCCATGTCCA
TTACAGGTAACTGTATCTAAGGACGACACTGTTATTCTTGATGGAGCTGGAGACAAGAAATCCA
TTGAAGAGAGGGCTGAGCAGGTTCGTACAACATTAATTCATTGCGTTACTAGTGCATTATTTTG
AAAATCGTGGTTGTTGATAGATTATATAAATGCTGTGTTGCAGATTAGATCTGCAATTGAGCTA
AGCACTTCTGATTACGACAAGGAAAAGCTACAGGAGCGGTTGGCAAAGCTCTCTGGAGGTGTTG
CTGTTCTAAAG
Conservation Information
Conserved circRNAs osa_circ_007027
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021