Detail information of BGIOSGA011176_circ_ag.1


General Information
CircRNA Name BGIOSGA011176_circ_ag.1
ID in PlantcircBase osi_circ_004660
Alias 3:7418628|7423497
Organism Oryza sativa ssp. indica
Position chr3: 7418628-7423497  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011176_circ_g.1 BGIOSGA011175_circ_g.1 BGIOSGA011175_circ_g.2 BGIOSGA011175_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTGGAACTTCTCCAAGGGATAGGAGAGTTTTGTGTCTTTCCCATCTTTGAATAACGCGTAAC
CAAGGACACGCTGAGCATCTATTTCTTGAACACAATcctcaagacccagctccatcaatttcaa
atagccaccaggctgtagcagttcaccaacaattctatcaggctccgtcatgtcccgctctata
acatgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAGACCCAGCTCCATCAATTTCAAATAGCCACCAGGCTGTAGCAGTTCACCAACAATTCT
ATCAGGCTCCGTCATGTCCCGCTCTATAACATGCACTCGTCGCCCATCCTAATTCAACAAACGA
AACCAGGAATATTAGATTTTCTTTTTCAGGATATTTCTGTTTTTACCACAATGCATCGCTTGAT
GGTAACGAGATACATGACTGCATTTTTACTATTGAGTGTTCTGTTGTCGGATAACATGAATGAT
ACTAGTACAATAGAAGTGATTCATTCTACCAAATACAAAAGACACTATGGTATCTCAATGTGTT
TGTATCAATAGCAATTTTGACTCTTCACGTTCTACAAGACATTATTTTCACCGTACAGGTTACT
AAAATTATAGTACGAAAGTATTTTAAGTGAGAAATAGAGTGAAATGGAACTAGTACAGTTCCAT
GGTCAATCTAGGTGGTTTTAAGGAAGATGATGGTAAAACTCTTGATGATTAGAAATTTGCACTA
ATCCTAAAACATAGTATTGTTAAAAAAAACCTGGCGCTTTGGTAATTTTACTCCTAAGTGAAAA
GTGTACATAAACTGCATCTCGTACTGAACATAAGTACATAACACCAGCTATTGTTGGCCCGGTT
TAAAGAAAAAAAACCCAGATGTATTACTTTTAGAAAAAACAAATAAAACATTTTCGTATCAATG
GTGCATTGGTGCGCCACTTACAAGTTGGTGGTAGACTGGTACTAGTAGTAGTTACGAAAGCAAA
ATTCCAGCCTAAAAAGATACGAACGATTCGCCTCAACCAAATGCGAGTACGTCAACAAACGAGT
GAGAGACAAAAATGTAGCCACCTTTCCGAGCGTGTAGGCGAGCGCAGATCCGGCGACCCCGGCA
CCAACAATGACGATGTCCGTCCGGTCACCCCCATCGCCGCCAACAACCCGGCAGCCACCCTCCG
GCGCGACCTCCCGTTGGCGGCGGCGGCGCCGCCACCCCATCTTCACTGCGACGAGGAAGGCCGC
CGTGAGGAGCGTGGCCGCGGCGAGGCCAACGAGCTGCCCGGCGCCGGCGACCGCATCCATTTCT
TGCTGCTCTGCGTGCGTACGTACGTGGGTGGGTGGAAGCTTAGAGAAGTGCAAGCGAGGTGACG
GGAGACTACGTTTTATGGGAGAAGAAGTGAGCTGAAAAAAGGCCGGACCGCCGCTGATTAGCAG
CTGGCAATGGCATCGTCAGCTTTCGCTGGCGTGGCTCGTGTTGGCAGAGCTGGAGCTGCTTTGC
GCAACAGGAGTCAACGTGATTCAGCGAGCAAACGGTAGCCGTCCATCTCGCCCCCGCCACACGA
ATCTCGAGGCCGGAAAACCATGTCCGGCTCCCAGTTTTACAGGCTGTGGCCATTGCATTACCAC
CTCTTCTTCTGCCGCTACAGTCCGAGATCCCCAGGCACGGATCTTGGCGCTTAATGAAGTGATA
ATTTTTACTGGTTATTAGTAGGTGGCAGTCTGGCAGACATGCCCCTTGTGCCCTTGCCATATGA
CTACTACTTGCAGGAATTGTTCGTCGGATGAAAGAATGCCATGAATATCATAGATACCATGGCT
TTATTTAGTGCTGTGGACCAAGCAACTTTGCATAAAAGAAACAGTAGCAGACAGAACAGACAGG
AGGAGCAAAGACTGGCAATCGCCGTCGCCGGAAGCCAAACAGAAGATGAAAATATTAAATGGTA
CAGATCGCAGATCGTGGGCCTCTTGGCATGTTGGACCATAGCCATTCACAGTGCTCCGACGTGT
CATTCGGCCATCGCTCGACACGTCGGAGATTCGCAGCCAGCTAGGCGTCACGCGCGACCAAACC
AAGTCCGCGGAGCATACTTTGGCCACCCGTTCTTCTGCAACTATCTGACAACTCGAGGGCGCGC
GGCGTGGGGGAGAACGGCGCGGCCGCGTTGTGGAGGTCGTGGCCTCGCCCTTCCTCCCACGACC
CCCTTCGCGGGGAGCTCGAGCAGGAGCCCAGCGGCGGCGGCGCAGCCATGGAGGTAGTCTTACC
AGGTAAACCGGCGAATGACGGCGATGACGACCACGACTTCACCCATCCCGATCTGCGCCCCCTT
CGGGAGTTCGCCGGCCGTCTCGATCCGTGGCGCCGGGAGCTCGCCGGCAGTCTCGATCCGTGTC
GCTGTGAGCTCGCCGGCCGCCTCGATCTCACCCATCCCCATCTCTACGTCCTCCGGGATCTCGT
CGGCCCTGTCCCACCTCGATTTGCGCCGCCTGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGCA
GCAGTAGCACGGGATCGATCTGAAGAAGCGGCGGAGGAGAAGGAGCAGCGGCACGGGAGAGAGA
AGGAGCAGCGCACGTACGGGAGATTGATCGATTTGCTCGGGGAGAGAGATGGGTGGGGAAAGGT
ATTCCCATGGTGGGCCCAGCGTGAGAAAAAAAATCTGTTATGGACCCCACCCAAAGCTACACGC
ACTGGGCAGACAGGAGCTTCGTCTGTTTTTTGCCTATGTGGAGGCTGGGCTTCTCGCTGAGACG
GTGGCGCATTGCTAATGCCCTAATGATGTTGTTTACTAGCAAACACAGTTGTATCAATCAATCA
CACACAGGAGTCCTACCCAATGGAATTCAGTGGATTAGCAACGCACCCAGTTAGAGCAAAGACG
CAATCATGATGAATTCATGGGGGATATACAGCTTAAGGATTAGCAGTCGACATGCATCCCTGAC
GGAACAACGAAAGTGGCAAGTGTACAGGGAATGTGACGGTGTATACAGGTCCCCTCGTTCCATT
AGAACAGCACACACAACCTCACGGCCTGACGACTACTACCAATTACACAGGAAAACTGCCATCC
ACGAAAAACATCCGCCGATCAGGACAGTGGCAGGGATTTTCTCTTCGCTTCTCCTTTCATTTTC
CCCCCTTACTCCATTGGACGAGGAGCACGATAATAGGCAGGGACAGTGGCGGGGAAGAACATTT
GCCTCACACCTTCAGCTTTGATGATGGGGAAAATTATACCACATGCACTCTGCAGTGAAAACTC
TGGATTAGCAATAGTATAGAAACGGAAAAAAAAAGTCTATTTAGGGTTTAGCGTTTAGGGTTTA
GGATAGGGAATGAAAAAATTGTATAGAAAACTGTCCATGAATGGTACCACGATGGAAATAGTAA
AGTTTGAAACTTTGAAGAATAAGATTTGAGATACTCACGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATAGCGACAGCAAAGAAATGTGCCACTAAACTCAATGG
TCGAGGATTCAGACCAGACAGAAGAGCAATAGGCCCATTTGAAAAGACACCTCCAAGGCTCAAG
TAATCAAAGCAGGCTTGGCGCATCTCATTCCTAGCCTGATCAGGTGAGGCACTGAAAACCTTGT
ATAGAGCACCAGCTAATGTGTTTATGGTAGAAGCAACCGGCTGTGAACATGAAAGCGCCATACA
TTAGACAGCATACATTTTGAAGTTGGGTGGTAAATTGTGAAATGAAGAGTGAAGACTAACCTTC
CGCAGTGTATAGAATGATTCAAGGTATTTGCAAAGAGCAGATGCATCATGCAGATTGCGGAGAG
GCTTGAGAAGATTACGTAGCACAACAATGTCAGATAATGCAACAGTCATTCCGCCACCAGTCAA
AGGATGCCGCATGTTGAATGCATCACCCATCAAAAGTGCACCAGGGGTTGGATGTGGAGCAGCC
GGCATGCTCCTGTTTGGCATTGTTCTTATGCTTCCCTTATCAATGGCTGCTATGAATGAATCAT
AGATTTCTGGAGGAATCTGTCAACAGAACATTTCCATTGACATTTAGTTGCTATGAGTAGGCAA
GCAAAAACTCGGGACAAGACTGACTGAAATAGCAAAATAATACCTGAGGTGCAACCACTGTTTT
GAGATATTTTGCCATTTCACCGTTTGCTATGGAAGGCACCTTCTGACCAGGGACATCAACCAAA
CAGCGAACTTCAGTGCTGCTTATTGGGTAAAATAGGATAGGTGAAGGATTGGCCAGGACAACAT
GGCCATGGTTTGCATGAGGAAGTTGACAATTCTCCAGGACCAGCCCAACAAAACAAGATGGTAC
ATCAACCTAACCACATATTTCCATCAATATTAGATCTTCTACATGCATGAACAAAAAAGGATAG
TGCAAAATCTAAAAACTGTACCTTTGGAGAGCAAAGGGCGCGGCGAAGGTTTGAGAAACAGCCA
TCGCATACAATTGTCAGAGGTGCATATGCTTTTAATTCTTCACCTGACTTGGTCTTGTATTTAA
CACCCTTAACTGTACCATCTTCTTCAACCAATGATGTAACAGTTCCTTGCTCCAATTGAACACT
GAAATATAAAACATAATGCCAAACATTTACCTCATGTCACATGCAGGTGCACGAATTAGATACA
TCCAGATACGGCGCATGTAGAAGGAAAGAACATGTGAAATACATCATTCTGGAAGAGTAGCAAA
ATAAGCACTTAAACATAATCTAATATTTTAATCCTCTAGAGGCAACTAAAATACTAATGAAATG
CTCACATCAAACAATACAAGAAAATCATAAAAATAAGTATGTCAAAAATTCTAGTAAAGATAAA
TTTGTGTCGAGAAAGACTATTACTTAGGCAAAGATGCAGCTTTCTGGCGCATCCTCTGTATAAA
CCGTCCATTGTGAAAGCTCCTACCAGCAACATCTGAGTGGAACTTCTCCAAGGGATAGGAGAGT
TTTGTGTCTTTCCCATCTTTGAATAACGCGTAACCAAGGACACGCTGAGCATCTATTTCTTGAA
CACAAT
Conservation Information
Conserved circRNAs osa_circ_018726*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021