Detail information of AT1G73600_circ_g.9


General Information
CircRNA Name AT1G73600_circ_g.9
ID in PlantcircBase ath_circ_010021
Alias At_ciR3215, Ath_circ_FC0985, Ath_circ_FC4981
Organism Arabidpsis thaliana
Position chr1: 27671799-27672132  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder, find_circ
Parent gene AT1G73600
Parent gene annotation S-adenosyl-L-methionine-dependent methyltransferases superfamily
protein
Parent gene strand +
Alternative splicing AT1G73600_circ_g.1 AT1G73600_circ_g.2 AT1G73600_circ_g.3 AT1G73600_circ_g.4 AT1G73600_circ_g.5 AT1G73600_circ_g.6 AT1G73600_circ_g.7 AT1G73600_circ_g.8 AT1G73600_circ_g.10 AT1G73600_circ_g.11 AT1G73600_circ_g.12 AT1G73600_circ_g.13 AT1G73600_circ_g.14
Support reads 2/7
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G73600.2:2
AT1G73600.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGCCATATGAATGACGAAGATGGGAATTCGTATGAACTCTCTTTGGTTAGCTGTAAATGCATT
GGAGCTTATGTGAGAAACAAAAAGAACCAGAACCAGgttgaagatttggcgaaaaagatgttac
aatggacaaaggttggcgggtatattttctttcgggagtcttgtttccatcagtctggtgataa
caagcgga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 255
Transcript exons: 27671799-27671942,27672022-27672132
GTTGAAGATTTGGCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTTCTTTCGGG
AGTCTTGTTTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTACCGTGAACC
TAAATTTTACACAAAGCTTTTCAAAGAATGCCATATGAATGACGAAGATGGGAATTCGTATGAA
CTCTCTTTGGTTAGCTGTAAATGCATTGGAGCTTATGTGAGAAACAAAAAGAACCAGAACCAG

Genomic sequence GTTGAAGATTTGGCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTTCTTTCGGG
AGTCTTGTTTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTACCGTGAACC
TAAATTTTACACAAAGGTGTGCTACCTATAAATCCCTCCACTCTTCTGTTTCTAGACGACAATT
ATTTGAACTCTGGTACATGAATTCCTCTCAGCTTTTCAAAGAATGCCATATGAATGACGAAGAT
GGGAATTCGTATGAACTCTCTTTGGTTAGCTGTAAATGCATTGGAGCTTATGTGAGAAACAAAA
AGAACCAGAACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.465807551
Functional Information
Coding potential Y
Potential coding position 27671820-27672129(+)
Potential amino acid sequence MLQWTKVGGYIFFRESCFHQSGDNKRKYNPTHYREPKFYTKLFKECHMNDEDGNSYELSLVSCK
CIGAYVRNKKNQNQVEDLAKKMLQWTKVGGYIFFRESCFHQSGDNKRKYNPTHYREPKFYTKLF
KECHMNDEDGNSYELSLVSCKCIGAYVRNKKNQNQVEDLAKKMLQWTKVGGYIFFRESCFHQSG
DNKRKYNPTHYREPKFYTKLFKECHMNDEDGNSYELSLVSCKCIGAYVRNKKNQNQVEDLAKKM
LQWTKVGGYIFFRESCFHQSGDNKRKYNPTHYREPKFYTKLFKECHMNDEDGNSYELSLVSCKC
IGAYVRNKKNQNQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA