Detail information of AT1G73600_circ_g.4


General Information
CircRNA Name AT1G73600_circ_g.4
ID in PlantcircBase ath_circ_010016
Alias NA
Organism Arabidpsis thaliana
Position chr1: 27671033-27671942  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G73600
Parent gene annotation S-adenosyl-L-methionine-dependent methyltransferases superfamily
protein
Parent gene strand +
Alternative splicing AT1G73600_circ_g.1 AT1G73600_circ_g.2 AT1G73600_circ_g.3 AT1G73600_circ_g.5 AT1G73600_circ_g.6 AT1G73600_circ_g.7 AT1G73600_circ_g.8 AT1G73600_circ_g.9 AT1G73600_circ_g.10 AT1G73600_circ_g.11 AT1G73600_circ_g.12 AT1G73600_circ_g.13 AT1G73600_circ_g.14
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G73600.2:4
AT1G73600.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGGTATATTTTCTTTCGGGAGTCTTGTTTCCATCAGTCTGGTGATAACAAGCGGAAGTACAAC
CCAACACACTACCGTGAACCTAAATTTTACACAAAGgcgaggagcgtgaaatccaaaagaatta
ctggaaagagcattcagtgggattgagtgttgaagctatgatgcttgattccaaagcttctgac
ctcgacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 536
Transcript exons: 27671033-27671148,27671312-27671449,27671554-27671691,27
671799-27671942
GCGAGGAGCGTGAAATCCAAAAGAATTACTGGAAAGAGCATTCAGTGGGATTGAGTGTTGAAGC
TATGATGCTTGATTCCAAAGCTTCTGACCTCGACAAAGAAGAACGTCCTGAGATACTTGCGTTT
CTTCCACCTATTGAAGGGACAACAGTGCTAGAGTTTGGTGCTGGAATTGGTCGTTTTACTACTG
AATTAGCTCAGAAGGCCGGCCAGGTCATTGCGGTTGACTTCATTGAAAGTGTTATCAAAAAGAA
TGAGAACATTAACGGTCACTACAAGAACGTCAAATTTCTGTGCGCTGATGTCACATCACCAAAT
ATGAACTTTCCAAATGAGTCTATGGATCTGATATTCTCCAACTGGCTGCTAATGTATCTCTCTG
ATCAAGAGGTTGAAGATTTGGCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTT
CTTTCGGGAGTCTTGTTTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTAC
CGTGAACCTAAATTTTACACAAAG

Genomic sequence GCGAGGAGCGTGAAATCCAAAAGAATTACTGGAAAGAGCATTCAGTGGGATTGAGTGTTGAAGC
TATGATGCTTGATTCCAAAGCTTCTGACCTCGACAAAGAAGAACGTCCTGAGGTTTATTTCGAC
TCACCCACTATAAAGTTATCATCTTTGCTATATATAGATCATTTTGAGATATGTATGCCTTGAT
GAGTTGAATCTTTGCTGTCCTTTATTGTGTTATGGACTTATGAAGGAAAGCTTCTAAAGGCTTA
AATTATGTGTGTGTTTGTGTCAGATACTTGCGTTTCTTCCACCTATTGAAGGGACAACAGTGCT
AGAGTTTGGTGCTGGAATTGGTCGTTTTACTACTGAATTAGCTCAGAAGGCCGGCCAGGTCATT
GCGGTTGACTTCATTGAAAGTGTTATCAAAAAGGTTGTTAGTTCACGTCCATGCTTGTTCTTTC
TAGCTACTTATAAGACTTGTATTTTTCTCGAGTTTTGTTTGATTTTTTTCTCTAATGAGAGTTT
CATCTCCAGAATGAGAACATTAACGGTCACTACAAGAACGTCAAATTTCTGTGCGCTGATGTCA
CATCACCAAATATGAACTTTCCAAATGAGTCTATGGATCTGATATTCTCCAACTGGCTGCTAAT
GTATCTCTCTGATCAAGAGGTAGCCATATTATTTATTACTGAGGGAACCACTTTTAAACTGTAC
ACACTTAGACTAATCGCTTATATCCCTTGGACAAATTTTCATGTCTTTTCATCAAATTGCAGGT
TGAAGATTTGGCGAAAAAGATGTTACAATGGACAAAGGTTGGCGGGTATATTTTCTTTCGGGAG
TCTTGTTTCCATCAGTCTGGTGATAACAAGCGGAAGTACAACCCAACACACTACCGTGAACCTA
AATTTTACACAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.195560219
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017