Plant Circular RNA Database

Detail information of Os04g0499300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os04g0499300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_024436
					
						Alias
						Os_ciR3916
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 24948249-24951244  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os04g0499500						
					
						Parent gene annotation
						
							Hypothetical protein. (Os04t0499500-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os04g0499300_circ_g.1 Os04g0499300_circ_g.3 Os04g0499300_circ_g.4 Os04g0499300_circ_g.5 Os04g0499300_circ_g.6 Os04g0499300_circ_g.7 						
					
						Support reads
						2/1
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0499300-02:2
Os04t0499300-01:7
Os04t0499300-02:2
Os04t0499500-00:7
Os04t0499300-01:7

General Information
CircRNA Name	Os04g0499300_circ_g.2
ID in PlantcircBase	osa_circ_024436
Alias	Os_ciR3916
Organism	Oryza sativa
Position	chr4: 24948249-24951244 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os04g0499500
Parent gene annotation	Hypothetical protein. (Os04t0499500-00)
Parent gene strand	+
Alternative splicing	Os04g0499300_circ_g.1 Os04g0499300_circ_g.3 Os04g0499300_circ_g.4 Os04g0499300_circ_g.5 Os04g0499300_circ_g.6 Os04g0499300_circ_g.7
Support reads	2/1
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0499300-02:2 Os04t0499300-01:7 Os04t0499300-02:2 Os04t0499500-00:7 Os04t0499300-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTGAATAACACAACAGATTGCAAGTACCTCACGCAGTTCGAGAAGTTGATCTCTTGTATAGCG
AACACGCTCGCGCACCTCAAAATTTGGATCACCAATctcttcacgtcgaggcacccaattgttt
gaacgaagatcaaccacatcacgaaccataaacctcagacgtggtgccaactgaaggtttgttg
ttaactcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1176
Transcript exons: 24948249-24948497,24948570-24948920,24949007-24949094,24
949229-24949326,24949904-24950125,24950253-24950348,2495
1173-24951244
CTCTTCACGTCGAGGCACCCAATTGTTTGAACGAAGATCAACCACATCACGAACCATAAACCTC
AGACGTGGTGCCAACTGAAGGTTTGTTGTTAACTCCTTCATCTGAATGAAGTAGGTATCATTAA
TTCGACGAGATTTTGGGTTCTCGTCAAGCTGTTTACCAATTGTATTGAAGAACTGACAAATAGC
CTCAACGTTTTCCTCTTCAGGGCAAGCCTTTTTATCAGGTCCAGACCCCAAGAGTTCCTGAACA
ATGTGATGAACTATCTTTTCAGGTACCATCTTTTGCTTAAGTAGCTCACCAATTAGACGGATAT
TTCCAAGTGTTCTTAGTTTGACAATCCTTTCTTTGTCCCTTCTCTCCATCTCTTGGTCAGGGCC
AGTCAATTTTGCTATTTCAGCCCTTAGGCTCTCAGCACCTTCAAATGCTTCCTGACAATTGTTC
AACAGCACACGCTTGAATGTAATCTCTTTGCCACCTGGTTCTTCCGAAGGGAATGATGGTAGCT
TCTCATTGAGATCGGAACAAAGTTGAGCATACATCGGACAGAAGGTGGGCTCAAAAACAGCCTT
CTCAAATATGAGAGAAATAACATCCTTTAGAATATCAGCAGTGGTAATTCCAGATTCCATTAGT
TGGCCCTTGAGTAGATCAAATTTCTCCGGTGTCAGTTTGTTTAGTATACCTTTCACTGTTTTCA
GGACTCTATCTTTCTCTGAGAGATTGCCTCTTCTAGCTGACCAAGGTACCTCAGCCTTGATAAG
AGCAGGAGTCGGGCCAACCTGAGCTTTTGAAGCAAACTGGTGGTTTAATTGATCCTGCCTGTTA
ACTTGCTCTTGTTGCCGACCACTTGAAGCATGTGCTGCTTTAGCTTCACGAATGTTGTCCCAGG
ACTTCTCTTCATTAGCTGCCGGAGGTTGAACCGTGCGTGCACGCCAGTCACGGTTATCTGTCTC
ACCATACCGATTGTGCGGTTGCGCCTGGGTTTGTGTCTGCACTTGCACATCTGACTCAGGGCGA
CCCCAAATCTGATCTTCACCATGAAGCTCTATATCAATCTCTTGATTAATTCTTAAGATGGCCT
CAGGTATGTCAACGATCTCACGCAGTTCGAGAAGTTGATCTCTTGTATAGCGAACACGCTCGCG
CACCTCAAAATTTGGATCACCAAT
						
					

						Genomic sequence
						
							CTCTTCACGTCGAGGCACCCAATTGTTTGAACGAAGATCAACCACATCACGAACCATAAACCTC
AGACGTGGTGCCAACTGAAGGTTTGTTGTTAACTCCTTCATCTGAATGAAGTAGGTATCATTAA
TTCGACGAGATTTTGGGTTCTCGTCAAGCTGTTTACCAATTGTATTGAAGAACTGACAAATAGC
CTCAACGTTTTCCTCTTCAGGGCAAGCCTTTTTATCAGGTCCAGACCCCAAGAGTTCCTGCATA
TAGAACAGATTAGACAAGCTACCCCTGAATAATAATAACTTTATTACCAATTTGCTAATGCATA
CCTGAACAATGTGATGAACTATCTTTTCAGGTACCATCTTTTGCTTAAGTAGCTCACCAATTAG
ACGGATATTTCCAAGTGTTCTTAGTTTGACAATCCTTTCTTTGTCCCTTCTCTCCATCTCTTGG
TCAGGGCCAGTCAATTTTGCTATTTCAGCCCTTAGGCTCTCAGCACCTTCAAATGCTTCCTGAC
AATTGTTCAACAGCACACGCTTGAATGTAATCTCTTTGCCACCTGGTTCTTCCGAAGGGAATGA
TGGTAGCTTCTCATTGAGATCGGAACAAAGTTGAGCATACATCGGACAGAAGGTGGGCTCAAAA
ACAGCCTTCTCAAATATGAGAGAAATAACATCCTGAATCAAAAGCAGAAGATATATTAATCACA
AGGAGGCTAGCAAAAAATAGAAAGCTACAGAAAAGAGATCTAAAATCATCCAACCTTTAGAATA
TCAGCAGTGGTAATTCCAGATTCCATTAGTTGGCCCTTGAGTAGATCAAATTTCTCCGGTGTCA
GTTTGTTTAGTATACTGCATACGCACAAGAAAAACAGGCAGCAAGTCAATGCCAGAAAACTGTG
TTATAAAGAAATAAAGAAATAAAGAAATAAAAGCACTCAAAAAGGAACAAAAACATGAAAAAGA
CTGAACGATAATTATGATACCCTTTCACTGTTTTCAGGACTCTATCTTTCTCTGAGAGATTGCC
TCTTCTAGCTGACCAAGGTACCTCAGCCTTGATAAGAGCAGGAGTCGGGCCAACCTGAAAGACA
TACATCAGCAAAGGCCTGATCACAAAGTCACAAATACATACAAGTATACAAGTTATGAAAGAAA
AATACATATTAAAACATGTGAATTGATTTCATACAACAAAATAATATGGACTGTCACATACAAG
ACAAACTGACATTGTTCTGTACCAATTTATAACCCGACACTTCTTCTGTGGTTTACATTTCAAC
ATTCATTGCAAGAAAGATAGGGTTAAAAGAGCATAGATGGCACTAGTGATCAATTGTGAATGAG
GGGACAGCAAAATGTGTAAATAACACTGTTGAGTTGGGTAGACGATCCCGCAAAAGGCAAAACC
TAGTTAGTTTAGTAATTTGATGAATAATAATAGCCATGGATTAACCGAGGAGGTTACATCAGAC
ATAATCAACAGAGGGAACCAACATTAATTCCGAATCAGTAGCTACCACTAAGCAAGGCTACTTC
AAAAGCAACATTGTTTAGCGCAGGAAGAAATATGAGCTTATTCAAGATATGAAAAAAAATAATG
AATGAATAAGGTCAAATGGAACAAACTTTACTGATAATTCTTGTCTTGAACATACCTGAGCTTT
TGAAGCAAACTGGTGGTTTAATTGATCCTGCCTGTTAACTTGCTCTTGTTGCCGACCACTTGAA
GCATGTGCTGCTTTAGCTTCACGAATGTTGTCCCAGGACTTCTCTTCATTAGCTGCCGGAGGTT
GAACCGTGCGTGCACGCCAGTCACGGTTATCTGTCTCACCATACCGATTGTGCGGTTGCGCCTG
GGTTTGTGTCTGCACTTGCACCTGAACAACAAAAGACTACAATTTGAGACAGAATTGTATGCTT
CAACCAGACCAATTGGTAGGATTGATTAATACGTATGGTAAAACCAAGTGAATTATGATGACAG
CGGAAATAGCAAGAGCTCACATCTGACTCAGGGCGACCCCAAATCTGATCTTCACCATGAAGCT
CTATATCAATCTCTTGATTAATTCTTAAGATGGCCTCAGGTATGTCAACGATCTGTTAGTAAGT
AAAATCATAATTAGTACGCAAAAAATTAGTAGTCTTCACAAGGTCGCAATATAAATATTATATG
CCAGTTGAATGTTAGACACTGTCTAATGTTGTCTCAATAGAAGGTGTAGTACATTTATAAAACC
AGGTTAAAACAGAACGACCGAACTGCGAAAATAGGGTACTAAAACTCAACCCCCCCCCCTCTCT
TTTATTGCATTTCAAGACTACAGAGTAAACAAGTAACCAAAACTTATATCGAAAGAAAGCTGCG
GCTCTTCCACTTGAGGCTAGTAGGTACAGTTTCACTTAAATATCCTGTGAGTGCCTCTATTTCC
ATCCTAGATCGGTGCTACTTTGTATATAGCATAGTCTAAAGTTAAATCATTCATCACTGAAATT
TCCAATGATATGCTAGCAACGCATACCATCGAAGTACTCGTACCAGCAAAATTTCTGTTATAAC
CATTTCAATGTGGCCAATTTAGACACTTCTACATTTATTGCAGCCAAAGTTGGTTGTGTTTCAA
CTTTCACTGCACGAATACCTAGGGGACATTAACGTGGTATATTTCGATGTTTGTGTGCTATGCA
CCTAGTTGCAGAAACACCACCTACGCGATATTGTTTTCCATGTCTGATGTGTTGAAAAGTATTC
CAAATAGAAACTTCTGCTCTAATTTAGCTCAAATGTGCCAGATACGCTGCAAGCATTTTTCAAC
AAAACCAAACGACAGGGAGCACGTAAAGCAGAACATGTCTACTAAGATATTCACAGCAAATTTC
CCATCCAGAAACTGATATTGAATAACACAACAGATTGCAAGTACCTCACGCAGTTCGAGAAGTT
GATCTCTTGTATAGCGAACACGCTCGCGCACCTCAAAATTTGGATCACCAAT
						
					

			
		

Sequences
Splice junction sequence	ATTGAATAACACAACAGATTGCAAGTACCTCACGCAGTTCGAGAAGTTGATCTCTTGTATAGCG AACACGCTCGCGCACCTCAAAATTTGGATCACCAATctcttcacgtcgaggcacccaattgttt gaacgaagatcaaccacatcacgaaccataaacctcagacgtggtgccaactgaaggtttgttg ttaactcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1176 Transcript exons: 24948249-24948497,24948570-24948920,24949007-24949094,24 949229-24949326,24949904-24950125,24950253-24950348,2495 1173-24951244 CTCTTCACGTCGAGGCACCCAATTGTTTGAACGAAGATCAACCACATCACGAACCATAAACCTC AGACGTGGTGCCAACTGAAGGTTTGTTGTTAACTCCTTCATCTGAATGAAGTAGGTATCATTAA TTCGACGAGATTTTGGGTTCTCGTCAAGCTGTTTACCAATTGTATTGAAGAACTGACAAATAGC CTCAACGTTTTCCTCTTCAGGGCAAGCCTTTTTATCAGGTCCAGACCCCAAGAGTTCCTGAACA ATGTGATGAACTATCTTTTCAGGTACCATCTTTTGCTTAAGTAGCTCACCAATTAGACGGATAT TTCCAAGTGTTCTTAGTTTGACAATCCTTTCTTTGTCCCTTCTCTCCATCTCTTGGTCAGGGCC AGTCAATTTTGCTATTTCAGCCCTTAGGCTCTCAGCACCTTCAAATGCTTCCTGACAATTGTTC AACAGCACACGCTTGAATGTAATCTCTTTGCCACCTGGTTCTTCCGAAGGGAATGATGGTAGCT TCTCATTGAGATCGGAACAAAGTTGAGCATACATCGGACAGAAGGTGGGCTCAAAAACAGCCTT CTCAAATATGAGAGAAATAACATCCTTTAGAATATCAGCAGTGGTAATTCCAGATTCCATTAGT TGGCCCTTGAGTAGATCAAATTTCTCCGGTGTCAGTTTGTTTAGTATACCTTTCACTGTTTTCA GGACTCTATCTTTCTCTGAGAGATTGCCTCTTCTAGCTGACCAAGGTACCTCAGCCTTGATAAG AGCAGGAGTCGGGCCAACCTGAGCTTTTGAAGCAAACTGGTGGTTTAATTGATCCTGCCTGTTA ACTTGCTCTTGTTGCCGACCACTTGAAGCATGTGCTGCTTTAGCTTCACGAATGTTGTCCCAGG ACTTCTCTTCATTAGCTGCCGGAGGTTGAACCGTGCGTGCACGCCAGTCACGGTTATCTGTCTC ACCATACCGATTGTGCGGTTGCGCCTGGGTTTGTGTCTGCACTTGCACATCTGACTCAGGGCGA CCCCAAATCTGATCTTCACCATGAAGCTCTATATCAATCTCTTGATTAATTCTTAAGATGGCCT CAGGTATGTCAACGATCTCACGCAGTTCGAGAAGTTGATCTCTTGTATAGCGAACACGCTCGCG CACCTCAAAATTTGGATCACCAAT
Genomic sequence	CTCTTCACGTCGAGGCACCCAATTGTTTGAACGAAGATCAACCACATCACGAACCATAAACCTC AGACGTGGTGCCAACTGAAGGTTTGTTGTTAACTCCTTCATCTGAATGAAGTAGGTATCATTAA TTCGACGAGATTTTGGGTTCTCGTCAAGCTGTTTACCAATTGTATTGAAGAACTGACAAATAGC CTCAACGTTTTCCTCTTCAGGGCAAGCCTTTTTATCAGGTCCAGACCCCAAGAGTTCCTGCATA TAGAACAGATTAGACAAGCTACCCCTGAATAATAATAACTTTATTACCAATTTGCTAATGCATA CCTGAACAATGTGATGAACTATCTTTTCAGGTACCATCTTTTGCTTAAGTAGCTCACCAATTAG ACGGATATTTCCAAGTGTTCTTAGTTTGACAATCCTTTCTTTGTCCCTTCTCTCCATCTCTTGG TCAGGGCCAGTCAATTTTGCTATTTCAGCCCTTAGGCTCTCAGCACCTTCAAATGCTTCCTGAC AATTGTTCAACAGCACACGCTTGAATGTAATCTCTTTGCCACCTGGTTCTTCCGAAGGGAATGA TGGTAGCTTCTCATTGAGATCGGAACAAAGTTGAGCATACATCGGACAGAAGGTGGGCTCAAAA ACAGCCTTCTCAAATATGAGAGAAATAACATCCTGAATCAAAAGCAGAAGATATATTAATCACA AGGAGGCTAGCAAAAAATAGAAAGCTACAGAAAAGAGATCTAAAATCATCCAACCTTTAGAATA TCAGCAGTGGTAATTCCAGATTCCATTAGTTGGCCCTTGAGTAGATCAAATTTCTCCGGTGTCA GTTTGTTTAGTATACTGCATACGCACAAGAAAAACAGGCAGCAAGTCAATGCCAGAAAACTGTG TTATAAAGAAATAAAGAAATAAAGAAATAAAAGCACTCAAAAAGGAACAAAAACATGAAAAAGA CTGAACGATAATTATGATACCCTTTCACTGTTTTCAGGACTCTATCTTTCTCTGAGAGATTGCC TCTTCTAGCTGACCAAGGTACCTCAGCCTTGATAAGAGCAGGAGTCGGGCCAACCTGAAAGACA TACATCAGCAAAGGCCTGATCACAAAGTCACAAATACATACAAGTATACAAGTTATGAAAGAAA AATACATATTAAAACATGTGAATTGATTTCATACAACAAAATAATATGGACTGTCACATACAAG ACAAACTGACATTGTTCTGTACCAATTTATAACCCGACACTTCTTCTGTGGTTTACATTTCAAC ATTCATTGCAAGAAAGATAGGGTTAAAAGAGCATAGATGGCACTAGTGATCAATTGTGAATGAG GGGACAGCAAAATGTGTAAATAACACTGTTGAGTTGGGTAGACGATCCCGCAAAAGGCAAAACC TAGTTAGTTTAGTAATTTGATGAATAATAATAGCCATGGATTAACCGAGGAGGTTACATCAGAC ATAATCAACAGAGGGAACCAACATTAATTCCGAATCAGTAGCTACCACTAAGCAAGGCTACTTC AAAAGCAACATTGTTTAGCGCAGGAAGAAATATGAGCTTATTCAAGATATGAAAAAAAATAATG AATGAATAAGGTCAAATGGAACAAACTTTACTGATAATTCTTGTCTTGAACATACCTGAGCTTT TGAAGCAAACTGGTGGTTTAATTGATCCTGCCTGTTAACTTGCTCTTGTTGCCGACCACTTGAA GCATGTGCTGCTTTAGCTTCACGAATGTTGTCCCAGGACTTCTCTTCATTAGCTGCCGGAGGTT GAACCGTGCGTGCACGCCAGTCACGGTTATCTGTCTCACCATACCGATTGTGCGGTTGCGCCTG GGTTTGTGTCTGCACTTGCACCTGAACAACAAAAGACTACAATTTGAGACAGAATTGTATGCTT CAACCAGACCAATTGGTAGGATTGATTAATACGTATGGTAAAACCAAGTGAATTATGATGACAG CGGAAATAGCAAGAGCTCACATCTGACTCAGGGCGACCCCAAATCTGATCTTCACCATGAAGCT CTATATCAATCTCTTGATTAATTCTTAAGATGGCCTCAGGTATGTCAACGATCTGTTAGTAAGT AAAATCATAATTAGTACGCAAAAAATTAGTAGTCTTCACAAGGTCGCAATATAAATATTATATG CCAGTTGAATGTTAGACACTGTCTAATGTTGTCTCAATAGAAGGTGTAGTACATTTATAAAACC AGGTTAAAACAGAACGACCGAACTGCGAAAATAGGGTACTAAAACTCAACCCCCCCCCCTCTCT TTTATTGCATTTCAAGACTACAGAGTAAACAAGTAACCAAAACTTATATCGAAAGAAAGCTGCG GCTCTTCCACTTGAGGCTAGTAGGTACAGTTTCACTTAAATATCCTGTGAGTGCCTCTATTTCC ATCCTAGATCGGTGCTACTTTGTATATAGCATAGTCTAAAGTTAAATCATTCATCACTGAAATT TCCAATGATATGCTAGCAACGCATACCATCGAAGTACTCGTACCAGCAAAATTTCTGTTATAAC CATTTCAATGTGGCCAATTTAGACACTTCTACATTTATTGCAGCCAAAGTTGGTTGTGTTTCAA CTTTCACTGCACGAATACCTAGGGGACATTAACGTGGTATATTTCGATGTTTGTGTGCTATGCA CCTAGTTGCAGAAACACCACCTACGCGATATTGTTTTCCATGTCTGATGTGTTGAAAAGTATTC CAAATAGAAACTTCTGCTCTAATTTAGCTCAAATGTGCCAGATACGCTGCAAGCATTTTTCAAC AAAACCAAACGACAGGGAGCACGTAAAGCAGAACATGTCTACTAAGATATTCACAGCAAATTTC CCATCCAGAAACTGATATTGAATAACACAACAGATTGCAAGTACCTCACGCAGTTCGAGAAGTT GATCTCTTGTATAGCGAACACGCTCGCGCACCTCAAAATTTGGATCACCAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.27293397

Conservation Information
Conserved circRNAs	NA
PMCS	0.27293397

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							24949044-24948251(-)
24948297-24950323(-)
						
					

						Potential amino acid sequence
						
							MESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITFKRVLLN
NCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIV
QELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLR
FMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRINQEIDIELH
GEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIREAKAAHASS
GRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEK
FDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEI
TFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGELLKQKMVP
EKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTN
LQLAPRLRFMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRIN
QEIDIELHGEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIRE
AKAAHASSGRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLKTVKGI
LNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPS
EEPGGKEITFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGE
LLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFI
QMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDI
PEAILRINQEIDIELHGEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEE
KSWDNIREAKAAHASSGRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDR
VLKTVKGILNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLN
EKLPSFPSEEPGGKEITFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTL
GNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSR
RINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREE(-)
MWLIFVQTIGCLDVKRLVIQILRCASVFAIQEINFSNCVRSLTYLRPS*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	24949044-24948251(-) 24948297-24950323(-)
Potential amino acid sequence	MESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITFKRVLLN NCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIV QELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLR FMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRINQEIDIELH GEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIREAKAAHASS GRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEK FDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEI TFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGELLKQKMVP EKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTN LQLAPRLRFMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRIN QEIDIELHGEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIRE AKAAHASSGRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLKTVKGI LNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPS EEPGGKEITFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTLGNIRLIGE LLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFI QMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREEIGDPNFEVRERVRYTRDQLLELREIVDI PEAILRINQEIDIELHGEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEE KSWDNIREAKAAHASSGRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDR VLKTVKGILNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLN EKLPSFPSEEPGGKEITFKRVLLNNCQEAFEGAESLRAEIAKLTGPDQEMERRDKERIVKLRTL GNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSR RINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREE(-) MWLIFVQTIGCLDVKRLVIQILRCASVFAIQEINFSNCVRSLTYLRPS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os04g0499300_circ_g.2

Address

Any questions?

Supported by