Plant Circular RNA Database

Detail information of Os08g0323600_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os08g0323600_circ_g.3
					
						ID in PlantcircBase
						osa_circ_036722
					
						Alias
						Os_ciR2628
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 14171714-14178143  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os08g0323600						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os08t0323600-01);Ribonuclease E an
d G domain containing protein. (Os08t0323600-02);Similar to Ribo
nuclease E. (Os08t0323600-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0323600_circ_g.1 Os08g0323600_circ_g.2 Os08g0323600_circ_g.4 Os08g0323600_circ_g.5 Os08g0323600_circ_g.6 Os08g0323600_circ_g.7 						
					
						Support reads
						6/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0323600-01:8
Os08t0323600-02:8

General Information
CircRNA Name	Os08g0323600_circ_g.3
ID in PlantcircBase	osa_circ_036722
Alias	Os_ciR2628
Organism	Oryza sativa
Position	chr8: 14171714-14178143 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os08g0323600
Parent gene annotation	Hypothetical conserved gene. (Os08t0323600-01);Ribonuclease E an d G domain containing protein. (Os08t0323600-02);Similar to Ribo nuclease E. (Os08t0323600-03)
Parent gene strand	-
Alternative splicing	Os08g0323600_circ_g.1 Os08g0323600_circ_g.2 Os08g0323600_circ_g.4 Os08g0323600_circ_g.5 Os08g0323600_circ_g.6 Os08g0323600_circ_g.7
Support reads	6/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0323600-01:8 Os08t0323600-02:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGTAGACATCAATGGCTTGGGGGAATGAAGTATGTTTGGTTCCACTTGAAGATTGCCACCTCTA
AGAGCATCCATCAATTGTACTGAACACAAAGTATGCttgttttgcagcttctaggtttacttct
agtatagccttctcctgggacgtcccctgaccaaacatactatgaccaccatttacatcaattg
aaaccaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2455
Transcript exons: 14171714-14171861,14172350-14172474,14172853-14172894,14
172999-14173316,14173875-14175094,14175188-14175497,1417
6523-14176707,14178037-14178143
TTGTTTTGCAGCTTCTAGGTTTACTTCTAGTATAGCCTTCTCCTGGGACGTCCCCTGACCAAAC
ATACTATGACCACCATTTACATCAATTGAAACCAGAGCTTCGGTCTGCTCTATAACTAAAGAAC
CGCCATTATGTAGTGGAACCCTTTTGCACAGAATATTGTCAATCTCCTTTTCTATTTTATATTC
ATCAAATATAGGAGTTCTTTTTTCGTAAAGATCAACTCGATTGCAGAGCTCAGGTGCAACTTCT
TGGAGATAGTTTGTGACCTCATGGTAGGTGCGAGGAGAATCCACAACTAGCCTCTTGACCTTCT
CATTGAAATCATCTTGAACAACAGATAGAGCCTGACCCTTTGACCTATGCAACATTACGGGAAC
AGCACCTTCTACACCCTCCTCAGCTGCTAAGGCAGCAGATTGAGCATGCTCAATTATTCCTTTC
CAGGTAGATAATAAGCGATCAAGATCCTTCTGCAACTCCTCCCAAGAATGGCCAGCAGCAACAG
TACGAGCTGTCAGAGTAAATCCAGGAGGTCGTAATAATTTGGTAATGCCTTTTAATCGGGTGCG
CTCTATCCCAGTAATTTTTTTCGATACTCCAACTTTGTTACCGCGGGAAACCAGTATCCAAAAC
CGGCTTCTTAAGCATGGAAAGGGACTCAGCGTTGGACCTTTCGAACCCAATCCCTCCTTGACAA
CTTGAACCATAATTTTTGTACCCTTGCGAACTTGAGACCACCTACTTCCATTTGTATCATCACT
AGACTCTCTCAAAGCATGTTGAATGGAAGATAATGTCTTAAGATCATTGGATACTTCTGACTGA
TCACCAGGCAAAAGATCCTCATTATATTCATCTTCCATGTGATCATCAATTTCATCATCTTTTT
CTTCATCATAACTAGAGATACTTTCAAATTCAGCACTATGAATCATATTTATCTTAGAATTGGG
CAAAAAGGCCATGTGTTCTTCATTTTCAGAAACTACCTCAGCTGGAAATGCTGATGACTCATCA
TCATTTTCTTCATCTGCCAACTCCCCATCAGTCATATCATCATCTTCGTCTTCATATGTTGGAA
GGCTATCATCATTATAATCAGAAAAATTCGCAGAATCTCTTTTAGCATTCTTGACAATTTGAGG
ATACACAAATGGATCACGGTTTTGCTTTATGCTCATGAGTGAAGGCCTCGAAAGTCCAATATCC
ACAAATGCACCTCCCATATGAGGCACAAGTTTTGTTACAATGCCTAAATAAATACTATCACACT
GTACATTGTTCTTGATGGGCTCCAGCAAGAGTTCAACCAGTTTTCCATCTTCCAATACTGCAAT
CCTCTGCATGGTGCAGACTGATGAATTAATTACTATGACTCTTGATGAAGGCTCTCCACTAGTT
GCCTTATCCTCCTCCAAAGGCGCTGGAGGTTTATCCATTTTCCTTAGCTTTCTGATAATATCCT
TTGCTTCTATTTTGCCTTTAGTTTGAACTACAGGTTTTTTTGCTACCACCTTGGATTGAAATAG
CCATGGCTCCTCTACAGGTTGATCCTGTTCAGGTATGTTTTCACTTACTTCACTCAAGTTCTGT
TTCTTATTGACAAACTTCCATCTGTTTTTCTCGTGCTTCCCTGCTGCAACAGATTTCTTTGCTG
CCATGACAGATCCAAGGATCCATGGTTCCTCAACAGGCTGATTCCTTTCATGTTCACTTATACT
TGATTTAATTGAATTTGCTTTATCGGTTACAGTAAAATCATCATGGACACTGGCAGATGGATTC
TCTGATATATTCTTGACATGTAAAGGTGTGCCGTTCCCAAGCCTCAGAATAATATGTTCACCTA
CTGATGAGGCTCGATCCACCGTATCAATGACAGAATGGGCTTTCACAATGTTTTGATGCTCTCC
ACTCTTAGCAAATTGGTCTTCAAGAAAATTAGCTTCCATCAGCCATGATCCCCAGGAAGGAGTG
GGAATGCCTGCCACACTAGTTTTCATCCACAGATCTTTCACAACAATGACATGTTTTTTCCGGC
CAACTGGGGGTATTGACAAGGAGTACTCAGGACCTGGCCTCCATATGATATCAGAAGAGGCGTC
ATTCTCCTCTCGAACAAAATAGTTATACTTGAAATGCACACCATATGGTACCTTTATTTCGGCC
GTCCATAAGTTGTTACTTTCAACAGAAGGAGACAACTGAACAGCCATATCTGATTCCCAACAGC
CCAAGGTAACTGGATCTCCAGTGACGAAGATTATGTAACCATCCAGCACATCTGATTTGAGGTT
CCACGATATTGTACAGAATCCTTTACAGGTTATGGCTGAGTCATCACGTCTAGTAGACATCAAT
GGCTTGGGGGAATGAAGTATGTTTGGTTCCACTTGAAGATTGCCACCTCTAAGAGCATCCATCA
ATTGTACTGAACACAAAGTATGC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	AGTAGACATCAATGGCTTGGGGGAATGAAGTATGTTTGGTTCCACTTGAAGATTGCCACCTCTA AGAGCATCCATCAATTGTACTGAACACAAAGTATGCttgttttgcagcttctaggtttacttct agtatagccttctcctgggacgtcccctgaccaaacatactatgaccaccatttacatcaattg aaaccaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2455 Transcript exons: 14171714-14171861,14172350-14172474,14172853-14172894,14 172999-14173316,14173875-14175094,14175188-14175497,1417 6523-14176707,14178037-14178143 TTGTTTTGCAGCTTCTAGGTTTACTTCTAGTATAGCCTTCTCCTGGGACGTCCCCTGACCAAAC ATACTATGACCACCATTTACATCAATTGAAACCAGAGCTTCGGTCTGCTCTATAACTAAAGAAC CGCCATTATGTAGTGGAACCCTTTTGCACAGAATATTGTCAATCTCCTTTTCTATTTTATATTC ATCAAATATAGGAGTTCTTTTTTCGTAAAGATCAACTCGATTGCAGAGCTCAGGTGCAACTTCT TGGAGATAGTTTGTGACCTCATGGTAGGTGCGAGGAGAATCCACAACTAGCCTCTTGACCTTCT CATTGAAATCATCTTGAACAACAGATAGAGCCTGACCCTTTGACCTATGCAACATTACGGGAAC AGCACCTTCTACACCCTCCTCAGCTGCTAAGGCAGCAGATTGAGCATGCTCAATTATTCCTTTC CAGGTAGATAATAAGCGATCAAGATCCTTCTGCAACTCCTCCCAAGAATGGCCAGCAGCAACAG TACGAGCTGTCAGAGTAAATCCAGGAGGTCGTAATAATTTGGTAATGCCTTTTAATCGGGTGCG CTCTATCCCAGTAATTTTTTTCGATACTCCAACTTTGTTACCGCGGGAAACCAGTATCCAAAAC CGGCTTCTTAAGCATGGAAAGGGACTCAGCGTTGGACCTTTCGAACCCAATCCCTCCTTGACAA CTTGAACCATAATTTTTGTACCCTTGCGAACTTGAGACCACCTACTTCCATTTGTATCATCACT AGACTCTCTCAAAGCATGTTGAATGGAAGATAATGTCTTAAGATCATTGGATACTTCTGACTGA TCACCAGGCAAAAGATCCTCATTATATTCATCTTCCATGTGATCATCAATTTCATCATCTTTTT CTTCATCATAACTAGAGATACTTTCAAATTCAGCACTATGAATCATATTTATCTTAGAATTGGG CAAAAAGGCCATGTGTTCTTCATTTTCAGAAACTACCTCAGCTGGAAATGCTGATGACTCATCA TCATTTTCTTCATCTGCCAACTCCCCATCAGTCATATCATCATCTTCGTCTTCATATGTTGGAA GGCTATCATCATTATAATCAGAAAAATTCGCAGAATCTCTTTTAGCATTCTTGACAATTTGAGG ATACACAAATGGATCACGGTTTTGCTTTATGCTCATGAGTGAAGGCCTCGAAAGTCCAATATCC ACAAATGCACCTCCCATATGAGGCACAAGTTTTGTTACAATGCCTAAATAAATACTATCACACT GTACATTGTTCTTGATGGGCTCCAGCAAGAGTTCAACCAGTTTTCCATCTTCCAATACTGCAAT CCTCTGCATGGTGCAGACTGATGAATTAATTACTATGACTCTTGATGAAGGCTCTCCACTAGTT GCCTTATCCTCCTCCAAAGGCGCTGGAGGTTTATCCATTTTCCTTAGCTTTCTGATAATATCCT TTGCTTCTATTTTGCCTTTAGTTTGAACTACAGGTTTTTTTGCTACCACCTTGGATTGAAATAG CCATGGCTCCTCTACAGGTTGATCCTGTTCAGGTATGTTTTCACTTACTTCACTCAAGTTCTGT TTCTTATTGACAAACTTCCATCTGTTTTTCTCGTGCTTCCCTGCTGCAACAGATTTCTTTGCTG CCATGACAGATCCAAGGATCCATGGTTCCTCAACAGGCTGATTCCTTTCATGTTCACTTATACT TGATTTAATTGAATTTGCTTTATCGGTTACAGTAAAATCATCATGGACACTGGCAGATGGATTC TCTGATATATTCTTGACATGTAAAGGTGTGCCGTTCCCAAGCCTCAGAATAATATGTTCACCTA CTGATGAGGCTCGATCCACCGTATCAATGACAGAATGGGCTTTCACAATGTTTTGATGCTCTCC ACTCTTAGCAAATTGGTCTTCAAGAAAATTAGCTTCCATCAGCCATGATCCCCAGGAAGGAGTG GGAATGCCTGCCACACTAGTTTTCATCCACAGATCTTTCACAACAATGACATGTTTTTTCCGGC CAACTGGGGGTATTGACAAGGAGTACTCAGGACCTGGCCTCCATATGATATCAGAAGAGGCGTC ATTCTCCTCTCGAACAAAATAGTTATACTTGAAATGCACACCATATGGTACCTTTATTTCGGCC GTCCATAAGTTGTTACTTTCAACAGAAGGAGACAACTGAACAGCCATATCTGATTCCCAACAGC CCAAGGTAACTGGATCTCCAGTGACGAAGATTATGTAACCATCCAGCACATCTGATTTGAGGTT CCACGATATTGTACAGAATCCTTTACAGGTTATGGCTGAGTCATCACGTCTAGTAGACATCAAT GGCTTGGGGGAATGAAGTATGTTTGGTTCCACTTGAAGATTGCCACCTCTAAGAGCATCCATCA ATTGTACTGAACACAAAGTATGC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017789 						
					
						PMCS
						0.317844461

Conservation Information
Conserved circRNAs	osi_circ_017789
PMCS	0.317844461

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14178120-14178107(-)
						
						Potential amino acid sequence
						
							MDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTLG
CWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPVG
RKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASSV
GEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVMA
AKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEAK
DIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQ
CDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDSL
PTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEE
KDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQV
VKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTART
VAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNE
KVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHNGG
SLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQAYFVFSTIDGCS*(-)
						
						Sponge-miRNAs
						
							osa-miR5083 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14178120-14178107(-)
Potential amino acid sequence	MDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTLG CWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPVG RKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASSV GEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVMA AKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEAK DIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQ CDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDSL PTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEE KDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQV VKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTART VAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNE KVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRVPLHNGG SLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQAYFVFSTIDGCS*(-)
Sponge-miRNAs	osa-miR5083
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0323600_circ_g.3

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