Detail information of Os08g0323600_circ_g.4


General Information
CircRNA Name Os08g0323600_circ_g.4
ID in PlantcircBase osa_circ_036723
Alias NA
Organism Oryza sativa
Position chr8: 14172350-14178143  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0323600
Parent gene annotation Hypothetical conserved gene. (Os08t0323600-01);Ribonuclease E an
d G domain containing protein. (Os08t0323600-02);Similar to Ribo
nuclease E. (Os08t0323600-03)
Parent gene strand -
Alternative splicing Os08g0323600_circ_g.1 Os08g0323600_circ_g.2 Os08g0323600_circ_g.3 Os08g0323600_circ_g.5 Os08g0323600_circ_g.6 Os08g0323600_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0323600-02:7
Os08t0323600-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTAGACATCAATGGCTTGGGGGAATGAAGTATGTTTGGTTCCACTTGAAGATTGCCACCTCTA
AGAGCATCCATCAATTGTACTGAACACAAAGTATGCcttttgcacagaatattgtcaatctcct
tttctattttatattcatcaaatataggagttcttttttcgtaaagatcaactcgattgcagag
ctcaggtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2307
Transcript exons: 14172350-14172474,14172853-14172894,14172999-14173316,14
173875-14175094,14175188-14175497,14176523-14176707,1417
8037-14178143
CTTTTGCACAGAATATTGTCAATCTCCTTTTCTATTTTATATTCATCAAATATAGGAGTTCTTT
TTTCGTAAAGATCAACTCGATTGCAGAGCTCAGGTGCAACTTCTTGGAGATAGTTTGTGACCTC
ATGGTAGGTGCGAGGAGAATCCACAACTAGCCTCTTGACCTTCTCATTGAAATCATCTTGAACA
ACAGATAGAGCCTGACCCTTTGACCTATGCAACATTACGGGAACAGCACCTTCTACACCCTCCT
CAGCTGCTAAGGCAGCAGATTGAGCATGCTCAATTATTCCTTTCCAGGTAGATAATAAGCGATC
AAGATCCTTCTGCAACTCCTCCCAAGAATGGCCAGCAGCAACAGTACGAGCTGTCAGAGTAAAT
CCAGGAGGTCGTAATAATTTGGTAATGCCTTTTAATCGGGTGCGCTCTATCCCAGTAATTTTTT
TCGATACTCCAACTTTGTTACCGCGGGAAACCAGTATCCAAAACCGGCTTCTTAAGCATGGAAA
GGGACTCAGCGTTGGACCTTTCGAACCCAATCCCTCCTTGACAACTTGAACCATAATTTTTGTA
CCCTTGCGAACTTGAGACCACCTACTTCCATTTGTATCATCACTAGACTCTCTCAAAGCATGTT
GAATGGAAGATAATGTCTTAAGATCATTGGATACTTCTGACTGATCACCAGGCAAAAGATCCTC
ATTATATTCATCTTCCATGTGATCATCAATTTCATCATCTTTTTCTTCATCATAACTAGAGATA
CTTTCAAATTCAGCACTATGAATCATATTTATCTTAGAATTGGGCAAAAAGGCCATGTGTTCTT
CATTTTCAGAAACTACCTCAGCTGGAAATGCTGATGACTCATCATCATTTTCTTCATCTGCCAA
CTCCCCATCAGTCATATCATCATCTTCGTCTTCATATGTTGGAAGGCTATCATCATTATAATCA
GAAAAATTCGCAGAATCTCTTTTAGCATTCTTGACAATTTGAGGATACACAAATGGATCACGGT
TTTGCTTTATGCTCATGAGTGAAGGCCTCGAAAGTCCAATATCCACAAATGCACCTCCCATATG
AGGCACAAGTTTTGTTACAATGCCTAAATAAATACTATCACACTGTACATTGTTCTTGATGGGC
TCCAGCAAGAGTTCAACCAGTTTTCCATCTTCCAATACTGCAATCCTCTGCATGGTGCAGACTG
ATGAATTAATTACTATGACTCTTGATGAAGGCTCTCCACTAGTTGCCTTATCCTCCTCCAAAGG
CGCTGGAGGTTTATCCATTTTCCTTAGCTTTCTGATAATATCCTTTGCTTCTATTTTGCCTTTA
GTTTGAACTACAGGTTTTTTTGCTACCACCTTGGATTGAAATAGCCATGGCTCCTCTACAGGTT
GATCCTGTTCAGGTATGTTTTCACTTACTTCACTCAAGTTCTGTTTCTTATTGACAAACTTCCA
TCTGTTTTTCTCGTGCTTCCCTGCTGCAACAGATTTCTTTGCTGCCATGACAGATCCAAGGATC
CATGGTTCCTCAACAGGCTGATTCCTTTCATGTTCACTTATACTTGATTTAATTGAATTTGCTT
TATCGGTTACAGTAAAATCATCATGGACACTGGCAGATGGATTCTCTGATATATTCTTGACATG
TAAAGGTGTGCCGTTCCCAAGCCTCAGAATAATATGTTCACCTACTGATGAGGCTCGATCCACC
GTATCAATGACAGAATGGGCTTTCACAATGTTTTGATGCTCTCCACTCTTAGCAAATTGGTCTT
CAAGAAAATTAGCTTCCATCAGCCATGATCCCCAGGAAGGAGTGGGAATGCCTGCCACACTAGT
TTTCATCCACAGATCTTTCACAACAATGACATGTTTTTTCCGGCCAACTGGGGGTATTGACAAG
GAGTACTCAGGACCTGGCCTCCATATGATATCAGAAGAGGCGTCATTCTCCTCTCGAACAAAAT
AGTTATACTTGAAATGCACACCATATGGTACCTTTATTTCGGCCGTCCATAAGTTGTTACTTTC
AACAGAAGGAGACAACTGAACAGCCATATCTGATTCCCAACAGCCCAAGGTAACTGGATCTCCA
GTGACGAAGATTATGTAACCATCCAGCACATCTGATTTGAGGTTCCACGATATTGTACAGAATC
CTTTACAGGTTATGGCTGAGTCATCACGTCTAGTAGACATCAATGGCTTGGGGGAATGAAGTAT
GTTTGGTTCCACTTGAAGATTGCCACCTCTAAGAGCATCCATCAATTGTACTGAACACAAAGTA
TGC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_007672*
PMCS 0.319292073
Functional Information
Coding potential Y
Potential coding position 14178141-14172882(+)
14178120-14172352(-)
Potential amino acid sequence MPFAQNIVNLLFYFIFIKYRSSFFVKINSIAELRCNFLEIVCDLMVGARRIHN*(+)
MDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTLG
CWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPVG
RKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASSV
GEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVMA
AKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEAK
DIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQ
CDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDSL
PTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEE
KDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQV
VKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTART
VAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNE
KVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCSVQ
LMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTL
GCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPV
GRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASS
VGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVM
AAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEA
KDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNV
QCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDS
LPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDE
EKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQ
VVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTAR
TVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFN
EKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCSV
QLMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVT
LGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPP
VGRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRAS
SVGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSV
MAAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIE
AKDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNN
VQCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDD
SLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYD
EEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMV
QVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTA
RTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDF
NEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCS
VQLMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPV
TLGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIP
PVGRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRA
SSVGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGS
VMAAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKI
EAKDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKN
NVQCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYND
DSLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSY
DEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIM
VQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLT
ARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDD
FNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017