Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0323600_circ_g.4 |
ID in PlantcircBase | osa_circ_036723 |
Alias | NA |
Organism | Oryza sativa |
Position | chr8: 14172350-14178143 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os08g0323600 |
Parent gene annotation |
Hypothetical conserved gene. (Os08t0323600-01);Ribonuclease E an d G domain containing protein. (Os08t0323600-02);Similar to Ribo nuclease E. (Os08t0323600-03) |
Parent gene strand | - |
Alternative splicing | Os08g0323600_circ_g.1 Os08g0323600_circ_g.2 Os08g0323600_circ_g.3 Os08g0323600_circ_g.5 Os08g0323600_circ_g.6 Os08g0323600_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os08t0323600-02:7 Os08t0323600-01:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_007672* |
PMCS | 0.319292073 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
14178141-14172882(+) 14178120-14172352(-) |
Potential amino acid sequence |
MPFAQNIVNLLFYFIFIKYRSSFFVKINSIAELRCNFLEIVCDLMVGARRIHN*(+) MDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTLG CWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPVG RKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASSV GEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVMA AKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEAK DIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQ CDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDSL PTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDEE KDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQV VKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTART VAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFNE KVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCSVQ LMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVTL GCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPPV GRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRASS VGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSVM AAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIEA KDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNV QCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDDS LPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYDE EKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMVQ VVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTAR TVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDFN EKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCSV QLMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPVT LGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIPP VGRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRAS SVGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGSV MAAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKIE AKDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNN VQCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYNDD SLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSYD EEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIMV QVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLTA RTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDDF NEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCKRHTLCS VQLMDALRGGNLQVEPNILHSPKPLMSTRRDDSAITCKGFCTISWNLKSDVLDGYIIFVTGDPV TLGCWESDMAVQLSPSVESNNLWTAEIKVPYGVHFKYNYFVREENDASSDIIWRPGPEYSLSIP PVGRKKHVIVVKDLWMKTSVAGIPTPSWGSWLMEANFLEDQFAKSGEHQNIVKAHSVIDTVDRA SSVGEHIILRLGNGTPLHVKNISENPSASVHDDFTVTDKANSIKSSISEHERNQPVEEPWILGS VMAAKKSVAAGKHEKNRWKFVNKKQNLSEVSENIPEQDQPVEEPWLFQSKVVAKKPVVQTKGKI EAKDIIRKLRKMDKPPAPLEEDKATSGEPSSRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKN NVQCDSIYLGIVTKLVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFSDYND DSLPTYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEFESISSY DEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIM VQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGFTLT ARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQALSVVQDD FNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEIDNILCK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |