Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d009750_circ_g.2 |
ID in PlantcircBase | zma_circ_009634 |
Alias | Zm08circ00038 |
Organism | Zea mays |
Position | chr8: 79634179-79634677 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d009750 |
Parent gene annotation |
Chromatin modification-related protein EAF1 B |
Parent gene strand | - |
Alternative splicing | Zm00001d009750_circ_g.1 Zm00001d009750_circ_g.3 Zm00001d009750_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009750_T009:2 Zm00001d009750_T008:2 Zm00001d009750_T005:2 Zm00001d009750_T001:2 Zm00001d009750_T007:2 Zm00001d009750_T006:2 Zm00001d009750_T002:2 Zm00001d009750_T004:2 Zm00001d009750_T003:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.201654358 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
79634493-79634181(-) 79634197-79634448(-) |
Potential amino acid sequence |
MYVGCNSNRYNIEPLIFSSCHAFLKIESAFINTIIMSEIYLEGSARQLFERLQGPFDEENLKAH FEKIILLMQQVHARRRQCVHRQPKECKERHKVLLDRSSGDGADSAEDSGSSQHYHNTLPGIPKA CSSAILFCGYSLLPAMYVGCNSNRYNIEPLIFSSCHAFLKIESAFINTIIMSEIYLEGSARQLF ERLQGPFDEENLKAHFEKIILLMQQVHARRRQCVHRQPKECKERHKVLLDRSSGDGADSAEDSG SSQHYHNTLPGIPKACSSAILFCGYSLLPAMYVGCNSNRYNIEPLIFSSCHAFLKIESAFINTI IMSEIYLEGSARQLFERLQGPFDEENLKAHFEKIILLMQQVHARRRQCVHRQPKECKERHKVLL DRSSGDGADSAEDSGSSQHYHNTLPGIPKACSSAILFCGYSLLPAMYVGCNSNRYNIEPLIFSS CHAFLKIESAFINTIIMSEIYLEGSARQLFERLQGPFDEENLKAHFEKIILLMQQVHARRRQ(- ) MPDVDSVYIGSLKSARSATRFFWIEALVMVLTVQKTLVHLSITIIHCRAFQRHVLPPSCFVGTL YCLPCMWDATQTDITLNL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020 |