Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009750_circ_g.4 |
ID in PlantcircBase | zma_circ_009635 |
Alias | Zm08circ00039, zma_circ_0002717 |
Organism | Zea mays |
Position | chr8: 79636643-79636836 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d009750 |
Parent gene annotation |
Chromatin modification-related protein EAF1 B |
Parent gene strand | - |
Alternative splicing | Zm00001d009750_circ_g.1 Zm00001d009750_circ_g.2 Zm00001d009750_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009750_T007:2 Zm00001d009750_T001:2 Zm00001d009750_T005:2 Zm00001d009750_T002:2 Zm00001d009750_T003:2 Zm00001d009750_T006:2 Zm00001d009750_T008:2 Zm00001d009750_T004:2 Zm00001d009750_T009:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.362563547 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
79636838-79636645(-) |
Potential amino acid sequence |
MTSGGWSNFEDQALVVLVHDMGQNWELVSDAINNIVQFKMTSGGWSNFEDQALVVLVHDMGQNW ELVSDAINNIVQFKMTSGGWSNFEDQALVVLVHDMGQNWELVSDAINNIVQFKMTSGGWSNFED QALVVLVHDMGQNWELVSDAINNIVQFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |