Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05213_circ_g.1 |
ID in PlantcircBase | ath_circ_002844 |
Alias | 1:5480154-5480506 |
Organism | Arabidpsis thaliana |
Position | chr1: 5480154-5480506 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G05213 |
Parent gene annotation |
lncRNA |
Parent gene strand | - |
Alternative splicing | AT1G15950_circ_g.1 AT1G15950_circ_g.2 AT1G15950_circ_g.3 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15950.3:1 AT1G15950.2:1 AT1G15950.5:1 AT1G15950.6:1 AT1G15950.1:1 AT1G15950.4:1 AT1G15950.7:1 AT1G15950.3:1 AT1G15950.2:1 AT1G05213.1:1 AT1G15950.5:1 AT1G15950.6:1 AT1G15950.1:1 AT1G15950.4:1 AT1G15950.7:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.183426464 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |