Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G15950_circ_g.1 |
ID in PlantcircBase | ath_circ_002841 |
Alias | At_ciR4710 |
Organism | Arabidpsis thaliana |
Position | chr1: 5479109-5479263 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder, find_circ |
Parent gene | AT1G15950 |
Parent gene annotation |
Cinnamoyl-CoA reductase 1 |
Parent gene strand | + |
Alternative splicing | AT1G15950_circ_g.2 AT1G15950_circ_g.3 AT1G05213_circ_g.1 |
Support reads | 2/3 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G15950.3:1 AT1G15950.2:1 AT1G15950.5:1 AT1G15950.1:1 AT1G15950.6:1 AT1G15950.4:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.27927882 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |